Cyprinodon tularosa (White Sands pupfish): 119783613
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Entry
119783613 CDS
T07496
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ctul04121
]
119783613 (pdzrn3b)
Enzymes [BR:
ctul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119783613 (pdzrn3b)
Ubiquitin system [BR:
ctul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
119783613 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Prok-RING_4
Sina_ZnF
PDZ_Tricorn
zf-TRAF
zf-rbx1
U-box
zf-RING_6
RING_XB3-XBAT31
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
119783613
NCBI-ProteinID:
XP_038141141
LinkDB
All DBs
Position
Unknown
AA seq
1051 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRIS
AKELNHVLPLKNLILKLEIKCDNHARGCDAVVTLQHLAEHAEMCDFSPAKCRNKGCEELV
CVRDLDVHMRDACEYRAAGICESGCGLTLTVREQKLNSHCCVRALKAHNSALQCKLLILD
RELKKQAIKANQREKALLAQLSAVHSELQMTALKYQKKFTEYSERIDSLTKTVAFSCKED
NTKSVTAVLLRDGGSLGFNIVGGRPCADDSDGTSNEGIFVSKIVEKGPADKEGGLQIHDR
IIEVNGKDLSKATHEQAVEAFRTAKEPIMVQVLRRAPYPQLVTPVADTQVSDTSTQTDIT
LQHIMALTKLSPASPPMTELEEYLLPEEPPPEHTYFDPNDFLEGIQQEMEREGLEYEEVD
LYRANIQDKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIIQINGVEIQNR
EDAVTLLTSEGNQNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLEQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDQTTTASNTL
GSCRKLTYSQDTLGSIDMPFSSESFISADYADADFLGIPADECERFRELLELKCQMRSSG
AQGLFSLASGGAEGHTEEGVDKELELLNEELRNIELECLSIVRAHKMQQLREQCRESWML
HNSGFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRR
GAESQGAAGPSGSSSSVGKTHKPLLSPVQEVCGPSRSRGSSKDPDRELQTESKEKKLGES
SKGGRSFQPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDVVSPGDL
EPKMEWKVKIRSDGTRYITKRPVRDRLLRERALRIHEERSGMTTDDDAISELKMGRYWSK
EERKQHAVRAKEQKQRREFMKQSRVDCLKEQSATEDKKEPNIIELSHKKMMKKRNKKIFD
NWMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagttggaccgcttcaaggggaccgtggacccagatttcaaatgcaacttg
tgcaacaaagtcctggaggacccgctcacgactccgtgcggccacgtcttttgctccggc
tgcgtgctgccctgggttgtccagcagagcagctgccccgtcaagtgccagcgcatctcc
gccaaggaactcaaccacgtcctgccgctgaagaacctcatcctgaagctggaaatcaaa
tgtgacaaccacgccaggggctgcgatgccgtagtgacgctgcagcatctggccgaacac
gctgagatgtgcgacttttccccagccaagtgcaggaataaaggctgcgaggagctggtg
tgcgtgcgggatctggacgtgcacatgcgggatgcctgtgagtacagagcggcggggatc
tgcgagagcggctgcgggctgacgctcacagtcagggagcagaagttaaacagccactgc
tgcgtgagagccctgaaggcgcacaacagcgcgctgcagtgcaagttgctcatcctggac
agagagctgaagaagcaggcgatcaaagccaaccagcgggagaaggcgctcctggctcag
ctgtctgcggtgcacagcgagctgcagatgacagcgctgaagtatcagaaaaaattcact
gagtacagcgagaggatcgactctctcactaagaccgtggctttctcctgcaaggaggac
aacactaaaagtgtgacagctgtcctccttcgtgatggtggatctttgggttttaacatc
gttggagggaggccatgtgcggacgacagtgacggcacttcaaatgaagggatctttgtg
tccaagattgttgagaaaggtccagcagacaaggagggaggccttcaaatccatgacaga
ataattgaggttaatggaaaggacctttcaaaagccacccatgagcaagcagtggaggcg
tttcgcacagccaaggagcccatcatggttcaggttctacgacgggccccatacccccaa
ctggtgaccccagttgcagacacccaggtgtcagacaccagcacccagactgacatcact
ctccagcacatcatggctctcaccaaactgtctcccgcctcgcccccaatgacggagctg
gaggagtatctgttaccagaggagcctcctccagaacacacatactttgaccccaatgat
ttcctggagggcatacaacaagagatggagcgtgaagggctggaatatgaggaggtggat
ctgtatcgagcaaacatccaagacaaactcggcctgaccatctgttacaggactgatgat
gaggatgaagctgggatctacattagtgagatcgatccaaacagcattgctgctaaggat
ggcaggattagagaaggggacaagatcatacagatcaatggtgtggagatccaaaatcga
gaggatgcagtgacgctgctgaccagtgagggaaaccagaacatctctctgttggtggcc
agaccagagatccagctggacgagggctggatggatgatgacaggaatgacttcctggat
gacctccacatggacatgctggagcagcagcaccatcaggccatgcagttcactgccagc
atgctggagcagaagaagcacgaggaagatgggggcaccacagacaccgccactttgctg
tccaatcaccatgaaaaggacagcggcgtcggccgcacagatgagagcacccgaaacgac
gagagctcagagcaagaaaaccttggtgacgaccagacgaccacagcatccaacaccctg
ggtagctgcaggaagcttacctacagccaggacacactgggcagcatcgacatgcccttc
agcagcgagtccttcatctcagccgactacgcagatgcagactttctcggcatcccggcc
gacgagtgtgagcgcttccgagagctactggagctgaagtgtcagatgaggagcagcgga
gcccagggcctgttcagtctggcctctgggggggccgaaggtcacacagaggagggcgtg
gataaagaactggagttactcaatgaggagctgcgcaacatcgagctagaatgccttagc
atcgtccgtgcccacaagatgcagcagctgagggagcagtgcagagagtcctggatgctc
cacaacagcggcttccgcaactacaacactagcattgatgctcgccgtcacgagctgtca
gacatcacagagctgcctgagaaatcggataaggacagttccagcgcctataacacaggc
gaaagctgccgcagcactcctctcactctggaactgtctcctgataattctctccgtaga
ggggctgagagtcagggagcagccggaccatctgggtccagcagctctgttggcaagaca
cacaagcccctcctttcccctgttcaggaggtctgtggccccagtcggagcagaggctcg
tctaaggacccggacagagagctgcagaccgagagcaaggaaaagaagctgggagagtcc
agtaagggtggacggagctttcagcctcattccccttacaagcacgctcacatccctgcc
catgcccagcactaccaaagctacatgcagctaatccagcagaaatccgctgtggaatac
gcccaaagccagatgagtctggtcagcatgtgccgagacgtggtcagtcccggtgacctg
gagcccaagatggagtggaaagtgaagatccgcagtgacggaacaaggtacatcacaaag
cggccggtgcgggacaggctgctgagggagcgcgccctccgtatccacgaggagcgcagt
ggcatgaccacggatgacgacgccatcagcgagctgaagatgggccgctactggagtaag
gaggagcggaagcagcacgctgtgcgggccaaggagcagaagcagcgccgggagttcatg
aaacagagcagagtggactgcctgaaggagcagagcgccacagaggacaagaaggagccc
aacatcattgaactcagccacaaaaagatgatgaaaaagagaaacaagaaaatttttgac
aactggatgaccatccaagaactgctgacccatggaaccaagtcaccagatgggaccagg
gtttataactcgctcctgtctgtgactacggtgtga
DBGET
integrated database retrieval system
