Cyprinodon tularosa (White Sands pupfish): 119784341
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Entry
119784341 CDS
T07496
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ctul03041
]
119784341 (ddx20)
Enzymes [BR:
ctul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119784341 (ddx20)
Spliceosome [BR:
ctul03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
119784341 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
CMS1
Motif
Other DBs
NCBI-GeneID:
119784341
NCBI-ProteinID:
XP_038142265
LinkDB
All DBs
Position
Unknown
AA seq
767 aa
AA seq
DB search
MAASMRRAAHDIETRKRTEDVLLAEGIDFSSLLLSQPVLDGLSSAGFQKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFVTIALDSLVLENPSTQVLVLAPTREIAVQIHSVVMAIGC
AMEGLECHVFIGGRPVSQDKAHLKKCHIAVGSPGRIKQLIELGMLSTASVRLFVLDEADK
LLEEGSFQDQINWIFSSLPVNKQMLALSATYTESLAQHLTRYMNEPTFVRLNPSDLGLKG
LKQFYKLVQSHPLPHKIFEEKVQHLMELFSKIPFNQALVFSNLHTRAQHLADILSSKGLP
AVCISGGLSQDQRLEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGMAVTYCCYGEEENKMMAIAQKCGLSLSALPSVLDAGLMDEPCDWDICS
EAAAPDSASQLVSRTTKKKGSNTRAPVTDPNWNKAGESSSQTRTEKTHTAALTSQNGKGS
ESRMDSSIKESLQHGPSPVQPTRKELQDALPKIPPLSSFKNSKWKFLTFEEAELDFRSFI
TTGLGRTVEIIREFRGGEGSDQDGHNECVMLQDEGAVVLTQRAERPQSVSNSYSSHSNGN
DDVKPKAPQKFQVAEQKQVLKHATGTASTELKPSAPVIYDQETCATNVGVAFQPESKKPL
RNRTANQNSPDITARDKSKKIKKDSIKLPERIKKERKRKPDEDELMETEEEWSSDAYWKA
CYEAWSHYYSALSASPEHGYQSYYSVANNWMAAYRMNEIYMQELMKH
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctccatgaggagagccgcacacgatatagagactcgaaaaaggacagaggac
gtgcttctggcggaggggattgacttcagctcactgctgttgtctcagccggtgttggac
ggactgtcctctgcggggtttcagaaaccgtcccccatccagctgaaggcgatccctctg
ggccgctgcggactcgatttgattgtgcaagccaagtctggaacagggaagacctgtgtt
ttcgtcacgattgcgctggactctcttgtcctggagaatccgtccactcaggttcttgtt
ttggctccgacgcgggagattgctgtgcagatccactcagtggtgatggccattggctgc
gctatggaaggcctggagtgtcatgttttcattgggggcaggcctgtgagccaagataaa
gcccatctgaagaagtgtcacatagctgtgggctcccctggtcgcatcaagcagcttatt
gaacttggcatgttgtccactgccagcgtcaggctcttcgttctggatgaggcagacaag
ctgcttgaggagggcagcttccaggatcagataaactggatcttctcctctctgccggtc
aataagcaaatgcttgcactctctgccacttacaccgagtcccttgctcaacaccttacc
cgctacatgaatgagccaacttttgttagactcaatcccagtgacctgggtcttaaaggc
ttaaagcagttttacaagctggtgcagtcccatccgctacctcacaaaatttttgaggag
aaggtgcagcacctaatggagctgtttagtaaaatcccatttaatcaagccttggtgttt
tctaaccttcacacaagggctcagcacctagcagatatcctgtcctcaaaagggttacct
gcagtttgtatttcaggtggtctgagtcaggaccagagacttgaggcgatgtccaaactg
aagcagtatcagtgcagagtgctcatctcaactgatctgacttctagaggtatagatgca
gagaaagtcaacctggtgatcaatctggatgtgccccaggactgggaaacctacatgcac
agaatcggacgggctgggcggttcggcactcaggggatggccgtgacctactgctgctat
ggagaagaggagaacaaaatgatggccattgctcagaagtgtggcctcagtttgtcagct
ttaccatccgtcttggacgcgggcttgatggatgagccatgtgactgggacatatgctcc
gaggctgccgctccagacagtgcctctcagctggtttccagaactacaaagaaaaagggt
tctaacaccagagccccagtgactgatcccaactggaataaagctggagagtccagcagt
cagacgaggacagagaaaacccacacagcagccctgacgtcacagaatggaaaaggaagt
gaaagtcggatggattcctccataaaggagagtttgcagcatggtccttctcctgtgcaa
ccgactcggaaagagctgcaagatgctctgccaaagatcccccccctcagctccttcaag
aacagcaagtggaagtttttgacgtttgaggaggctgagctggacttccgatctttcatt
accacaggtttagggaggacagtggagatcatcagggagttcagaggcggagagggcagt
gatcaggatggtcacaatgagtgtgtcatgcttcaggatgagggagccgtagttttgacc
caacgagccgagcggccgcagtctgtgtccaattcctacagctcccactctaatggaaac
gatgatgtcaaacctaaagctccccagaagttccaagtagctgaacagaagcaagtttta
aaacatgctactggaacggcatccactgagctgaaaccctctgcacctgtaatatatgac
caggaaacctgcgctacaaatgtaggggttgcttttcagcctgagagcaaaaaacctcta
agaaacagaacagccaatcagaacagtcctgatatcactgccagggataagtccaaaaaa
ataaaaaaagacagcataaagttaccagagaggattaaaaaggagcgaaagaggaagcct
gatgaagacgagttaatggagaccgaagaggagtggagttctgacgcctactggaaagcc
tgctacgaagcctggagccattactattctgctctgtctgcttctccagagcacggctac
cagagctactacagcgtcgctaacaactggatggccgcttatcgcatgaatgaaatctac
atgcaggaactcatgaaacactaa
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