Cyprinodon tularosa (White Sands pupfish): 119784434
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Entry
119784434 CDS
T07496
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctul03019
]
119784434 (helz)
Messenger RNA biogenesis [BR:
ctul03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
119784434 (helz)
3'-5' decay
Other 3'-5' decay factors
119784434 (helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
AAA_30
UvrD-helicase
ResIII
PAM2
zf_CCCH_4
AAA_22
AAA_16
PhoH
Mov-10_helical
zf-CCCH_4
AAA_5
AAA_7
Motif
Other DBs
NCBI-GeneID:
119784434
NCBI-ProteinID:
XP_038142407
LinkDB
All DBs
Position
Unknown
AA seq
2009 aa
AA seq
DB search
MADRRAEKSCEEASKSLARREYEAAVTHSTDALVVLAPQASPSGASVLPSPLSVVAAGPL
RSRALLYRIAAFLQLKNYDGADEDCKHVLADEVARVDGSLQASLRSMLLDGSLQEVVSIL
SKALYGEPVNGIVTRDLTRLKMLFSEIEAAKREMAPEYTDEQDEEVQDGWLYRPPPRGVT
SSEEYTLCKRYLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTENYM
ETLIEKWMNSLSPEKVLSDSLEGVTVETSSSLSMTVTSKKSSHSWIFSLLCKPARKLFRI
ALLYDAHRPHFSITGVSAGDRLQTVPKACQEWTPGEESAAAADNGLDHCVYKVAVGFSTE
IFGTFRQTIVFDFGSEPVLMQRIMVDAASIEDLEHLMAARQQLLMTAKRWDSSCKTIVEF
TPNETMADLERSLLARYQIPLSADQLFTQSVMDKTLTKDNYQARLHDLLYIEEIAQYKEV
SKFNIKVNLQLVTSFMLTGISVGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVL
LLPLGHEGFGGLAPSGVKERVYEAVIEEKTKDYIFLRICKSCCEELMLLPDRELQVELQF
QLNRQPLCEMHYALDRIKDNTILFPDISLVPTIPWSPNRQWDEQLDPRLNAKQKEAILAI
TTPISVSLPPILIIGPYGTGKTFTLAQAVKHILRQDNSRVLICTHSNSAADLYIKDYLHP
YVEAGNDHARPLRVYFRNRWVKTVHPVVQQYCLISSTQVTFQMPTREDILRHRVVVVTLS
TSQYLCQLDLDPGLFTHILLDEAAQAMECETIMPFPLASKTTRIVLAGDHMQLSPFVYSE
FARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYDGKLIASGKQPC
HKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPVAWGKLDEGSIGVV
SPYADQVFRIRAELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKE
QLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEHFISICHE
NASLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPLQGHQPSSQGLHPHHHPHP
QHVLPASSKQASQHHQQQQQSPPKGKQANHTEHLPPDGYVQSSPAVLMGNPIRAFTPPLG
AGPAGIGKSPSPVQRIDPHTGASILYVPAVYGGNMVMSMPLPLPWPGYQNRFAVDPRIMS
HPAAMAYNLNLLQPQNRGSPIPYSGVAHPSPLGMAQPSPEKDLQADLTRNGKVDGCTKAE
QTRLQTPERKNTDLREKQGDLDTGQSRSLDSQTELVGFPNAMLHRKEPSAAQRSLNYHLA
PPSPAFPPHHGSGRSFPQQYPVPRLPYRVNQPPHPGIPQQNQQQQLSPAFAGGSHASFFS
GNIPAHRSVQSPTVDGTDGSSGVEEMSSAIRTHMGHPGGQHPGLPQHNRVSNFGEDGQDG
NLVDSLDLQSPLALEALSQQQQQAARLGQWGEATGPFLQGGVAFPLPHHLAPFAQPGMAR
FPPQLLRAATWGLGANMEEEAVPSASAGPSCNRYPGLLRDIHPQEQPEHREATEVQPPPQ
SRLLQYRQSQSRASGDPSPSLAPLSNHTGPFPSGLYSHETNRNLLNENILNNQALQQQHP
GNPLYNTSSYPNQPPAQSASPPPSHVKYLLQEAQWSHSGPASASQQNHLLGNQNHSLLYG
LPIVAHHSRQEQVLMQLHQQQQQQQQQQQQENQGPDSESYHPLSPRTSAATALHSVDEYE
PRGPGRPLYQRRISSSYPDESSPANSLSAHPCPPEPQNHPQIQHQQLPQGPYGYVSHDHL
WPSNGEGPGPFQNIPCNGATLVQHRDLLASKVHRQADDGAKVEPAAAQQAHPHSLNSLQH
QFPPLLSNKKQQPPPPPPPPPQPPTDPSQGAPNLTKPPTMSYASALRAPPKPRAVRPEQA
KKNSDPLSLLQELNIGSSNGSNGYYSYFK
NT seq
6030 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaggagagcggagaagtcatgtgaagaagccagcaaatcgttagccaggcgg
gagtacgaggcggcagtcacccacagcacggatgccttggtggtccttgcaccccaagcc
tccccatccggtgcttctgtactgcccagccctctctcagtggtcgccgccggaccgctc
cgaagccgtgccctgctctaccgaattgctgccttcctacagctgaaaaactatgatgga
gcagatgaagactgcaaacatgttctggcagatgaggtcgctcgggttgatggttctcta
caggcgagtttgcgctccatgcttttggatggcagcctgcaagaggtggtcagcatccta
tcgaaagccctctatggagagccagtgaacggcatcgttacaagagacctgaccagatta
aagatgctcttctccgaaatcgaggcagcaaaaagggagatggctcctgaatacacggat
gagcaggacgaagaagtccaggatggctggttgtaccggcctcctcccagaggggtcacc
agcagtgaagagtacaccctctgtaaaaggtacctggagcaaggcctgtgtaggtacggg
gcccaatgtacgtcagcccactcacaagaagagctgatggagtggcagaaacgttacgcc
tcacgactcattcgcctcaaacagcagcaggaaagcaaacacttcacagagaactacatg
gaaactctgatagaaaaatggatgaactccctttctccggagaaagtgttaagtgacagt
ttagaaggagtgactgtagagacgagctccagcctctccatgacagtcacttctaagaag
tcctcccactcctggatcttctctttactgtgcaagcccgccagaaaactgttccgcatt
gccttgctctatgatgcccatcgaccccacttttccatcacgggcgtgtcagctggggac
cgcctccagacggttcctaaagcatgccaagagtggacaccaggagaggaatcagctgca
gcagccgacaatggtctcgatcattgcgtctacaaagttgcagttggcttcagcactgag
atctttggtaccttcagacagaccatcgtatttgactttggctctgagccggtgttgatg
cagaggatcatggtggatgctgcttcgattgaagacttggaacacctaatggctgcaagg
cagcagctcttgatgaccgcaaagcggtgggactcttcctgcaaaaccattgttgaattc
acgcccaacgaaaccatggctgacctggagagaagcctcctggcccgttaccagatacct
ctatcagcagaccagctcttcacccagtcggtcatggacaagactctaaccaaagacaac
taccaggcacggctgcatgacctgctctacatagaagagatcgcccaatataaggaagtc
agcaaattcaacatcaaggtgaaccttcagctggtgaccagcttcatgctaaccggcata
tctgttggagccaagtatgctcagaacggacagctctttgcacgctttaaactcactgaa
acactttctgaggacactttggctgggagactagtgatgaccaaggtgaattcagttctg
ctgcttccgttggggcatgaagggttcggcggtctggctccatctggtgtcaaagagcgc
gtctatgaggcggtgattgaggagaagaccaaggattacatcttcctaaggatttgcaaa
agctgctgtgaggagctgatgctgctgcctgacagagaattacaggtggagctccagttt
cagcttaacagacagcctctgtgtgagatgcactacgcgctggatcgtatcaaagacaac
accatccttttccctgatatcagccttgtccccaccatcccctggagccccaacaggcag
tgggatgagcagctggacccccgtctgaatgccaagcagaaagaggccatcctggccatc
accacacccatctccgtctctcttcctccaatcctcatcattgggccttatggtactggc
aagaccttcaccctggcacaggctgtcaaacacattcttcgccaggacaacagcagggtc
ctgatctgcactcactccaacagcgctgctgacctttacattaaagactatcttcatcct
tatgtcgaagcaggcaatgatcacgccagacctctcagggtatacttcaggaaccgctgg
gtgaagaccgtccacccggtggtccagcagtactgtctcatctccagcacacaggtcact
ttccagatgcccacaagggaggacatcctcaggcaccgtgttgttgtggtcaccctcagc
acttcccagtacctctgccagctggatttggaccctgggttgtttacccatatcctgttg
gatgaagcagctcaggccatggagtgtgaaaccatcatgccttttcctctagctagcaag
accacccgcatcgtgctggctggggaccatatgcagctcagtccgtttgtgtacagtgag
tttgcacgtgagcgtaacctgcatgtgtcacttctggaccggctgtacgagcactacccg
gctgaattcccctgccgcatcctcctgtgtgagaactaccgctcccatgaagctatcatc
aattacacatcagagttgttttatgacgggaagctaattgcgagtggaaagcagccatgc
cataaggatttctacccgctgaccttcttcacagccagaggagaagatgtccaggaaaag
aatagcactgcctactacaacaatgccgaggtgtttgagattgttgagcgagtggaagag
ctgcggaagaagtggcctgtcgcttggggtaagctggacgagggcagcatcggggtggtg
tcaccgtacgccgatcaagtgttccgtattcgcgctgaactacggaaaaaaaggatgcac
gaggtcagcgttgagagagtgcttaatgttcaaggtaaacagttccgggtgctgttccta
agcacagtgcggacccggcacacctgcaagcacaagcagactgccatcaaacgtaaagag
cagctggtggaagattcaacagaggaccttgactatggatttctgtcaaactacaagctg
ctgaacacggccatcaccagagctcagtctctggttgcagtggttggagaccccatagca
ctgtgctctgttggacgctgcaggaaattttgggagcacttcatttccatctgccatgaa
aacgctagcctgcatggaatcaccttcgagcagatcaaggctcagctggaggctctggag
ctcaagaagacttatgtcctgaacccgttggcaccagaattcattccgcgggccctcagg
ccccttcagggccaccagccttcttcacagggccttcatccccatcatcatccgcatccc
cagcatgttctgcctgcttcaagcaagcaggcttcacaacaccaccaacagcagcagcag
tcccctccaaagggaaaacaagcaaaccacacagagcacctcccacctgatggatacgtg
caatccagccctgcggttttgatgggaaatcccatccgggccttcacaccacctttgggt
gctggaccagctggcatagggaagtcgcccagccctgtgcagcggatcgatcctcacaca
ggggccagcatcctctatgtccctgcggtgtatggaggaaacatggtgatgtctatgcct
ctcccattgccctggccaggttatcagaaccgctttgccgtggatcctcgcatcatgagc
cacccagccgccatggcctacaacttaaacctgcttcagccacagaatcgaggctccccc
atcccttatagcggcgtggcccacccctctcctttaggaatggcccagcccagcccagag
aaggacctgcaggctgacctcaccagaaatggtaaagttgatggatgcacaaaagctgaa
cagacccgtcttcagacaccagaaagaaaaaacacagacttaagggaaaaacagggagat
ttagacacaggtcaaagtcggagtttagattcccaaacagagctggttggatttcccaat
gctatgcttcatcgaaaagaaccctcggctgcacagagatccctaaactaccacctggct
ccacccagcccagcttttcctccacatcacggcagtggaagaagcttcccccagcagtat
cctgttcccagactcccttatcgggtcaatcagcctccccatccaggaataccccaacag
aatcagcaacaacagcttagtcctgccttcgctggcggaagccacgcttccttcttcagc
ggcaacatacccgctcacagatctgtacaatcacccactgtggacgggacagacgggtct
tcaggggtggaggagatgagcagcgccatcaggactcatatgggccacccaggggggcaa
cacccaggcctgccacagcacaaccgagtcagcaactttggggaggatggccaggatgga
aatctggtagacagtttagacctccagagtcccctggctttggaagcccttagccagcag
cagcagcaggcggccagactgggccaatggggggaagcaacaggccctttccttcagggc
ggcgttgcctttcctctaccccatcatctcgcccccttcgctcaacctggcatggctcgc
tttcctcctcaactgctccgggctgcaacctgggggcttggtgccaatatggaggaggaa
gccgttccttctgcctctgcagggccatcgtgcaacaggtatcctggccttttgagagat
attcaccctcaggagcagccagaacacagggaagcaacagaagttcaaccgccgcctcag
tcccgcctgcttcagtatcgacagtcacagtcccgtgcctctggtgacccttcaccctct
ttggcccccctctccaatcacactggcccctttccttcaggactgtactcccatgaaacc
aatcgcaatcttctgaatgaaaatattctcaacaatcaagctctgcagcaacagcaccca
ggcaaccccctgtacaacaccagtagctacccaaaccaaccaccagctcagtcggccagc
cctcccccatcccacgtcaaatatcttctacaagaagcccagtggtcccacagtgggcct
gcttctgcgtcacagcagaaccaccttttagggaaccagaaccatagccttctatatggg
ctgcccatcgtggctcaccacagcaggcaggagcaagtgctgatgcaacttcaccagcag
cagcagcagcaacagcagcagcagcagcaagaaaatcaaggcccagactctgagtcctac
catccactgtcccctagaacatcagcagccacagctctgcacagtgtagacgagtatgaa
ccgagaggtccaggccggcccctctatcagcgccgcatctcctccagctacccagatgaa
tcatcgccagccaacagcctcagtgcccacccctgcccgccggagccccagaaccatccc
caaatccagcatcaacagctcccgcagggcccgtatggctacgtatcacatgaccacctc
tggccaagtaacggtgagggtccgggtccatttcagaacattccatgtaacggagccaca
ctagttcagcatcgggaccttctagcttccaaggtccatcgtcaggcagatgatggggcc
aaagtcgagcctgcagccgctcagcaggcacacccacacagcctcaactcccttcagcac
cagtttcccccacttctgtccaataagaagcagcagccgcccccaccgccgccgccacca
ccacagcctccaacagaccccagccagggggctccaaatctaacaaagccacctacgatg
tcgtacgcgagcgccctccgagcccccccaaaaccaagagctgttcgacccgagcaggcg
aagaagaacagcgacccgctctcccttctccaggagctgaatatcggaagctcaaacggt
agcaacggttattattcctactttaaatga
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integrated database retrieval system
