Cyprinodon tularosa (White Sands pupfish): 119784676
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Entry
119784676 CDS
T07496
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119784676 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctul03019
]
119784676 (parn)
Enzymes [BR:
ctul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
119784676 (parn)
Messenger RNA biogenesis [BR:
ctul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119784676 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_Thc1
R3H
RRM_1
NCBP3
Motif
Other DBs
NCBI-GeneID:
119784676
NCBI-ProteinID:
XP_038142788
LinkDB
All DBs
Position
Unknown
AA seq
679 aa
AA seq
DB search
MEVTRQNFKECLSTVYSAIDEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLMFQFGLCTFKYDQEKSKYIIKPFNFYVFPKPFSRTSPDIKFICQSSSIDFLASQG
FDFNKVFGHGIPYLNQEEEAQLREQTEERRNQHANGLGTPSFISPSSKGPAHVPDEQKDF
INKVVEKVEALFSGAGKTLDLDPCTGFQRKLIYQTLSWKFPKGLHVETLETEKKERFIQI
SKVDEEERRRREQQKLEKEQEELNNAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CPLPEDLQDFKEVTMCVFPRLLDTKLMASTQPFKELINNTSLAELEKQVKEAPFKPPCFE
TAEGFPSYDTAQEQLHEAGYDAFITGLCFVSMANHLGSFLTPPKAYISPRSKLIEPFFNK
LFLMRIIDIPYLNITGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYKIQTYADYIQGKQQEKEKLGQSAKSWGEDCWVRPHYS
SSTGFGYPRRKRSISPIQGEQGGEGAPTCDGWNNYSFPEGTGSKKMKFEDLGGKANVEAV
ESKTSEGWLKMTESSYSAESSPVPDTKSPEGTDPGSCADGTATWHQTPTVQGRKGQKSKK
KKSDASESTTSLFEVPEVW
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggaggttacacgccaaaattttaaagagtgcttaagcacggtgtacagcgcgatagac
gaggctgactttctcgccatcgatggagaattttcaggtataagcgacggtccaaatgtc
agtgcactaacaaacggcctggacacacctgaagagagatacacgaagctcaaaaagcat
tcaatggactttctgatgttccagtttggattgtgcacatttaaatacgaccaggaaaag
tcaaagtatattataaagccttttaacttttatgttttcccgaaaccattcagtaggaca
tctcctgatataaagtttatctgtcaaagttccagcattgactttctggcaagtcaggga
tttgacttcaacaaggtgtttggtcatggaattccatatctaaatcaagaggaggaagct
cagctgagagagcagacagaggaaaggagaaaccagcatgctaatggtctcgggacgccg
tcctttatctccccatcatccaaaggccctgcacatgtacccgatgaacagaaagacttc
atcaacaaagtggtagagaaggtcgaggccctctttagtggagctggaaagactctggac
ctggacccatgtacaggattccagagaaagctgatataccagacgctgagctggaagttt
cccaaaggtctccatgtggaaaccttggaaacagaaaaaaaggagagatttatccagatc
agtaaagtcgacgaggaggagaggaggaggagggagcaacaaaaactggagaaggagcag
gaagagctcaataacgccgtaggcttctccagagtcatccacgccatctctaaatctggt
aaactagtggttggccacaatatgcttttggatgtcatgcacacaatccaccagttctac
tgtccactgccagaggaccttcaagacttcaaggaggttacaatgtgtgtttttccaaga
cttttagacaccaagctgatggcctccactcagccatttaaggagctgatcaataacact
tctctggcagagttggaaaaacaagtgaaagaggctccattcaagccaccatgctttgaa
acggcagagggcttcccaagttatgacacggcccaggagcagctccacgaggcgggatac
gatgccttcatcaccggcctgtgtttcgtctctatggccaaccatctgggctctttcctg
acgccaccgaaagcttacatctctccccgatccaaactgattgaacctttttttaacaag
ctcttcctgatgaggattattgacataccctacctcaacattacaggaccagacttgcaa
cccaaaagagaccacgtcctgtatgtgaccttccctaaggaatggaagactagtgacctc
taccagctcttcagtgcctttggtaacatccaggtgtcttggatcgatgacacctcagcc
tttgtctctctaagtcagacagaccaggtgcagatcgctatgaacaccagccgctacgca
gagagctacaagatccagacatatgcagactacatccagggtaaacagcaggagaaggaa
aagcttggccagtcagccaagagctggggagaggattgctgggtgagacctcactactcc
tcctccactggatttgggtatcccaggaggaaacgcagcatcagtccaattcagggagag
caaggaggtgaaggcgctcccacctgcgacggctggaacaactactctttccctgaaggc
actggaagcaaaaagatgaaatttgaagatcttggtggaaaggcaaatgttgaagctgtg
gagagcaagacctcagaaggctggctaaagatgacagagtcatcgtattcagccgaatca
agtcctgtcccagataccaaaagtcctgagggcacagatccaggtagctgtgctgatggg
acagccacttggcatcaaactccaaccgttcaaggaaggaaaggtcaaaaaagcaagaaa
aagaagtcagatgcgtctgaatctacaacctccctgttcgaagtcccagaagtctggtga
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