Cyprinodon tularosa (White Sands pupfish): 119784782
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Entry
119784782 CDS
T07496
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ctul03009
]
119784782 (ddx55)
Enzymes [BR:
ctul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119784782 (ddx55)
Ribosome biogenesis [BR:
ctul03009
]
Eukaryotic type
Pre-60S particles
Helicases
119784782 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
SBF_like
Cas3-like_C_2
Importin_rep_6
YbjM
Motif
Other DBs
NCBI-GeneID:
119784782
NCBI-ProteinID:
XP_038142944
LinkDB
All DBs
Position
Unknown
AA seq
592 aa
AA seq
DB search
MENITDGTWDSLPVQINQKILQTLEELKFTHMTPVQSACIPLFMNNKDVAAEAITGSGKT
LAFVIPIIELLLKREEKLKKKQVGAMVITPTRELALQISEVMGTFIQKFPEFSQILLIGG
SNPAEDVEKFKEHGGNIVIATPGRLEDMFRRKTEGFELASAVRSLEVLVLDEADRLLDMG
FEASLNTILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGQAAAAAAQKTP
SRLSNYYSICRAEDKFNNLVAFLRQHKHEKNLVFFSTCACVEYFGRALESLVKKVTIHCI
HGKMKNKRNSIFAEFRSLKSGILVCTDVMARGIDIPDVNWVLQYDPPSNASAFVHRCGRT
ARIGNYGNALVFLLPMEETYVNFLSINQKCPLQKMSPIKDVVDVLPKVKAMALADRAMFD
RGMKAFVSYVQAYAKHECSLIFRVKDLDFVSLARGFALLRLPKMPELKGKSFPEFAETTV
DTETIRYKDKNREKQRRKRLAELKDKEKTELPKKSFVKNKAWSKQKTKKERKKKRAAKRK
HDEDSDVDDEYMKELLEDTRLLKKLKKGQISEEDFDQQIANRPKSKQEAEGP
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggagaacattacagacggcacgtgggacagcttacctgttcaaataaaccagaagatt
ttacaaaccctggaagagttgaaattcactcacatgactcctgtgcagtctgcttgtatc
ccgctgttcatgaacaataaagatgtggcagctgaggcgatcaccggcagcgggaagact
ttagcgtttgtcattccgatcatagagctgctgctgaagcgagaggagaagctgaagaaa
aagcaggttggcgccatggtgatcactcctactcgggaactggccctgcagatcagtgaa
gtgatgggaacgtttatccagaagtttccagagttctcgcagattctactgatcggtggc
agtaacccagcagaggatgtggagaagtttaaggagcacggaggcaacattgtgattgcg
acgcccggccgactggaggacatgttcaggaggaagacggagggatttgaactggccagc
gccgtcaggagtctggaggttctggttctggacgaagcagacaggctgctggacatgggc
tttgaggccagcctgaacaccatcctgggctacctgcccaagcagagacggaccggcctg
ttttcagccactcagacccaggagctggagaagctggtgagggccggcctcagaaacccc
gtacggatcacagtcaaagagaaaggtcaggctgccgccgccgctgcacagaagacgccg
tcccgcctctccaactactacagcatctgcagagcggaggacaagttcaacaacctggtg
gcgtttctaaggcaacacaagcatgagaagaacctggtcttcttcagcacctgtgcctgt
gtggaatacttcggccgagccttggagtcgctggtcaagaaggtcaccatccactgcatc
cacggaaagatgaaaaacaagcgcaacagtatttttgcagagtttcggtctctgaaaagc
gggatcttggtttgcaccgacgtcatggccaggggcatcgacatccctgatgtaaactgg
gtccttcagtacgatccgcccagcaacgccagcgctttcgtgcatcgatgcgggaggacg
gcgcgcatcggtaactatggcaacgccctcgtattcctgctgccgatggaggaaacttac
gtcaacttcttatccatcaaccagaagtgcccgctgcagaagatgtctcccattaaggat
gtggtggacgtgcttcccaaagtgaaggccatggccctggctgaccgagccatgttcgac
cgcgggatgaaggccttcgtctcatacgtccaggcatacgccaaacatgaatgtagcctc
atctttagagtaaaagatctggattttgtgtccttggctcgcggcttcgctttgctccgc
ctcccaaagatgccggagctgaagggaaaatcgtttcctgaattcgcggagacgaccgtg
gacacagagaccatacgctacaaggacaaaaaccgggaaaagcagagacggaaaaggctg
gctgagctgaaggacaaggaaaagacagagcttcccaagaagagcttcgttaagaacaag
gcctggtccaaacagaagaccaagaaggagcgcaagaaaaaacgggccgctaaaaggaag
cacgatgaggactctgatgtggatgacgaatacatgaaagagcttttggaagacacgcgc
ctccttaagaagctcaaaaaaggccaaatcagcgaggaagactttgatcagcagatcgca
aatcgaccaaagtcaaagcaagaagcagaaggaccctaa
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