Cyprinodon tularosa (White Sands pupfish): 119784893
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Entry
119784893 CDS
T07496
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctul03021
]
119784893 (taf1c)
Transcription machinery [BR:
ctul03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
119784893 (taf1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
Arc_capsid_dom
Motif
Other DBs
NCBI-GeneID:
119784893
NCBI-ProteinID:
XP_038143086
LinkDB
All DBs
Position
Unknown
AA seq
960 aa
AA seq
DB search
MDHQFPPKLFPSFYNRGPPEQLPRGRSGGWGAYGGVSAQGGSGPLSSWTFTSRRRVDGEV
WRQTEPLPVPLLSPRKAFQEYLMPPDPMDFLSHLQNFFIDDGLDAFRCTSEVLGENFYFK
KAKKKEKYRQGSVNMWRTKSYIDLLKYKPCPVSYPSRSLERFSSHMSDVVHDVPLELLGS
LLYEELTEQRERMQFSERSTGGALAYVPFSQSEGCLLYPGGLGMDRLHFHKVALQNSCMD
ASSAEPVSFQLRAPVRQISCGSVLGDCCVAVRSDYHCGVWRFGERKQPCLLQVVDAEAAA
TCVSVSPHVLGEVLVVSESGAANLWTVGKGLQKVRTEESNLYFNAKSPWRWCEFSAHPRV
MVYADRTGAELTDFRAKVSGAHHTLFRISSTSDCRSGERLLLCRYLGDVNTFHHLVATQH
SAYVMDERFPCVPMLKCDHMMQAPPLFCHVASDRRMGETAKVLLGSHSSQEITLLQYSGG
RLEACSSRGAPQALLRPTDSLTHLPVQIPHRQQAAAQRLASPAAGLTCFQKKGGAEDFSL
CVLQLTEVGDIFYQILERRPPAEDKSGAPEAQTSEQVQVSDPARHGDIITAAPETPDRIV
CLDSSTEGAEDESGTRKKMPVAFNDEPGLDAEVCGGEEVDRSSCWEAPLTISSSTAETWK
LWLQKLRLTGQNPETVRPQNFVVQTAGLLQAADRDAGGELDEPLRREMKGCMRRRSLLLN
DSASIKVPLTVPALVNAEAWTDALSDRLTAAWRGEEEWQAWWRDQLGTNRKMKADALRRK
RRMQKEARRAEGRRFQLSGSFTSSVSYQTDLDDPFESTGWSSAVSQGTLSDEEDGAVLQS
EEDRTLPVTATPDPIRTTTPQKYTPSRPRPLLPTQPNTPQTPRANQRSWRPQDDFLSSVW
GTQDAPPQSEEPLPSSWFPGSQSGSLRPSPGSLPSSQASQSQRGPSQASQPKRKKSRMGF
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggatcatcagtttcctcccaaacttttcccgtccttctataaccgcgggccgccggag
cagctgcccagaggccgcagcggaggatggggcgcctatggaggagtctcagcccagggc
ggcagtggccctctctccagctggacctttacatccagacggcgggttgatggggaggta
tggcgtcagacggagccgctgccggttcccctgctgtctcccaggaaagctttccaagaa
tatttgatgcctccagatccaatggacttcctgtcacatttgcagaacttcttcatagac
gatggtttagatgccttcaggtgcaccagtgaggtcctgggggaaaacttctacttcaag
aaagcaaagaagaaggagaaatatcgtcagggttcggtcaacatgtggaggaccaagagt
tacatcgatctgctgaagtataaaccgtgtcccgtctcgtatcccagcagaagtctcgaa
aggttctccagccatatgtcggacgtcgtgcacgacgttcctctggagctgctgggctcg
ctgctctacgaggagctgacggagcaaagggagcgcatgcagttctcagagagatccacc
gggggcgccctggcctatgtccctttctcacagagcgagggctgcctgctgtaccctgga
ggcctgggaatggaccgcctccacttccacaaggtggcgctgcagaactcctgcatggac
gccagcagcgctgagccggtgagcttccagctgagggcccccgtccgacagatcagctgc
ggctcggtcctcggcgactgctgcgtcgccgtgcgctccgattaccactgcggcgtctgg
aggttcggtgagaggaagcagccgtgcctgctgcaggtggtggacgcggaagccgctgcg
acctgcgtcagcgtcagccctcatgttctaggtgaagttctggtggttagtgagagcgga
gctgccaacctttggacggttgggaaagggctgcagaaggttcgaacagaagagagcaac
ttgtacttcaatgccaagtcgccatggagatggtgtgagttctccgcccacccgagggtg
atggtgtatgcagacaggacgggggcggagctaacagacttcagagccaaggtatcgggg
gcccaccacactttgttccggatcagcagcacctccgattgcaggagtggagagcggctc
ctgctgtgccgctacctgggggacgtgaacaccttccatcacctggtcgccacgcagcac
tcggcctacgtcatggacgagcgcttcccctgcgttcccatgctcaagtgtgatcacatg
atgcaggccccgccccttttctgccacgtcgcctcagaccggaggatgggggagaccgct
aaggttctgctcgggtcgcattcttctcaggagatcacactgctgcaatactcgggaggt
cggttggaggcgtgctccagccgcggcgctccccaggctctcctcaggcccacagacagt
ctgacacacctccccgtccagatcccccaccgccagcaggccgcggcccaaagactggct
tcccccgctgcaggtctgacgtgtttccagaagaaaggcggagctgaggacttcagcttg
tgcgtcctgcagctgacggaggtgggagacattttctatcagatcctggagcgccgcccg
ccggcggaggacaaatccggagctccggaggcgcagacatcagaacaggttcaggtctcc
gacccagcaaggcatggcgacatcatcacagcggcgccagaaacgcccgacaggattgtg
tgtttggattcttccacggagggggcggaggacgagagtgggactcggaagaagatgccg
gtcgccttcaacgacgaaccgggtttggatgcagaggtctgtggcggggaggaagtggat
cgcagctcctgctgggaggcgccactaaccatcagcagctccactgctgagacctggaag
ctctggctgcagaagctcaggctgacgggtcagaacccagagaccgtcaggccgcagaac
tttgtggtccaaactgccggtctgctgcaagccgccgacagagatgcaggaggcgagctg
gacgagccgctgaggcgggaaatgaagggctgcatgaggcggcgctcgctgctgctgaac
gactctgcctccattaaagtacctttaacagttcctgctctggtgaacgcagaggcctgg
acagacgccctcagcgaccggctgacggccgcgtggcggggagaggaagagtggcaggcg
tggtggcgagaccagctgggcacaaacaggaagatgaaggcagacgctctgaggaggaag
aggaggatgcagaaggaggcgcggagggcagagggccgccgcttccagctgagcggcagc
ttcacctcgtccgtcagctaccagacggacctggacgacccgttcgagtccacgggttgg
tcctccgccgtcagccagggcacgctgtcggacgaagaagatggggcggtactgcagagc
gaggaagaccgcacgcttcccgttacggcgaccccagaccccatccggaccaccacacct
cagaaatacactcccagcaggccccgtcccctgctcccaacccaaccaaacaccccccag
accccgagagccaatcagaggagctggaggccgcaggacgacttcctgagctccgtgtgg
ggaacgcaggacgcgccgccgcagagcgaggagccgctcccctcctcctggttccccggc
tcccagtccggttccctcagaccgagccccgggtctctgccgtcctcccaggcctcacag
agccagcgggggccatcacaggcgtcccagcccaaaaggaagaagtctcggatgggattc
tga
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