Cyprinodon tularosa (White Sands pupfish): 119785355
Help
Entry
119785355 CDS
T07496
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119785355 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctul03019
]
119785355 (xab2)
03041 Spliceosome [BR:
ctul03041
]
119785355 (xab2)
Messenger RNA biogenesis [BR:
ctul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119785355 (xab2)
Spliceosome [BR:
ctul03041
]
Complex B
Other components
Prp19-related factors
119785355 (xab2)
Complex C
119785355 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_15
ARM_TT21_C
ARM_TT21
TPR_16
SNAP
TPR_MalT
NRDE-2
TPR_1
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
119785355
NCBI-ProteinID:
XP_038143903
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MPSLNGKADVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITDPVYEEINNCHERALVFMHKMPRIWIDYCQFVVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETALRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAMRLAAIVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKEEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEFGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIVINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETDERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCMRFADMECKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKASTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEINIDEDDDEDDEDQGPDEVQLEQKSVPT
AVFGGLKED
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccttccttaaatggaaaagctgacgttatatttgaggatgatgatcttccatatgaa
gaggagattatcaggaatccatactctgtcaaatgttggatgcgctacattgaattcaaa
cagaatggacccaaatccaccctgaacatgatatatgagcgggctctgaaagaattgcct
ggaagttataaattgtggtacaattatctgagagaaaggaggaaacaagtgaaagggaaa
tgcatcacagatccagtttatgaggagattaataactgtcacgaaagagcactcgtgttt
atgcacaagatgcccaggatttggattgactactgtcagtttgttgtgtcgcaatgtaag
atcacaagaagtcggaggacatttgaccgggctctgagagctttacctgtaacccagcat
ccacgaatctggcctttgtatctacgctttgctcgtaaccttcccctgcctgagacagcc
ctgcgggtgtatcgaaggtatctcaagctatctccagagaatgcagaagagtacatagac
tacttgcggtctgttggtcgtttggacgaagcagctatgcgattagcagcaattgtaaat
gatgaaagctttgtgtccaaagagggcaaatctaactatcagctgtggcacgaactatgt
gatctgatctctcagaaccccgataaagtgacatctttgaatgtcggggccatcatacga
ggaggcctcacacgctttacagaccaacttggaaaactttggtgttctttggctgactat
tacatcaggagtggccactttgaaaaagcaagggacgtttatgaggaagctatccttaca
gtggtaacagtgagggatttcacacaagtatttgatagctatgctcagtttgaagagagc
atgattgcggcaaagatggagaccactgctgagatgggaaaagaggaagaagatgacata
gatctggagcttcgcctggctcgctttgagcagctgattgcacggcggccacttctactt
aacagtgtactactgaggcagaacccccataatgttcatgagtggcacaaacgggtaaaa
ctctatgaaggaaatccgcgacagatcatcaacacgtacactgaagcagttcagactgtg
gatccaatgaaggccacaggcaagcctcattctctctgggtttcttttgccaaattctat
gaggagaatgaacagctggatgatgccaggacaatctttgagaaggcaactaaagtgaac
tacaaacaggtggatgaccttgctgcagtttggtgtgaatttggagagatggagcttcgc
catgagaattatgatcaggcactgcgaatattgaggaaagctacagcaatcccatcaaag
aaagcggagtactttgattcgtctgagccagtccaaaacagagtctacaagtccctgaag
gtgtggtcgatgctggcagaccttgaggagagtcttggtactttccagtctacaaaagcg
gtgtatgaccggattatagatctacgcattgccactcctcaaattgtcatcaattatgcc
atgttcctagaagaacacaactactttgaggaaagctttaaagcatatgagcgagggatt
gccctcttcaagtggccaaacgtttatgacatctggaacacttacctcaccaagttcatt
gatcgttatggtggcaaaaaactggagcgagccagagatttatttgagcaagctttggat
ggctgccctgcaaagtttgcaaagactatttatctgctgtatgccaaactggaagaggaa
tatggactggcgcgacatgccatggcggtctatgaaagagcaacacaggcagtggaaact
gatgagagacaccatatgtttaatatctacatcaagagagcggcggaaatttatggagtg
acttacaccagagctatctaccagaaggctattgaggttcttcctgatgagcatgccagg
gacatgtgtatgagatttgcggacatggagtgtaaactaggtgagattgaccgtgccaga
gcgatctactcttactgctctcagatctgcgacccaagggtgactgcgaatttctggcag
acctggaaggaatttgagatccgacatggaaatgaggatacaattagggagatgttaaga
attaaacgcagtgtccaggctacatacaacactcaggtcaactttatgtcctctcaaatg
ttgaaggcttcaacaagttccacaggcactgtttcagatcttgctcctggtcagatggga
attgatgatatgaaaatgttggagcaaaaagctcagcaacttgctgcagaggctgagcag
gacaaacccaaaccaaaagagaaaattcttttcgtcaggagtgacacgtcacgaagtgag
ttggctgagctttccaaacaagccaatcctgatgagattaacatcgatgaggatgatgat
gaagatgatgaagaccaaggaccggacgaagtgcagcttgagcagaagagtgttccaacc
gcagtttttggaggtcttaaagaggactga
DBGET
integrated database retrieval system
