KEGG   Cyprinodon tularosa (White Sands pupfish): 119785355
Entry
119785355         CDS       T07496                                 
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
ctul  Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ctul00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119785355 (xab2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ctul03019]
    119785355 (xab2)
   03041 Spliceosome [BR:ctul03041]
    119785355 (xab2)
Messenger RNA biogenesis [BR:ctul03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     119785355 (xab2)
Spliceosome [BR:ctul03041]
 Complex B
  Other components
   Prp19-related factors
    119785355 (xab2)
 Complex C
    119785355 (xab2)
SSDB
Motif
Pfam: HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_C HAT_PRP39_N TPR_14 Suf TPR_12 TPR_2 TPR_8 TPR_15 ARM_TT21_C ARM_TT21 TPR_16 SNAP TPR_MalT NRDE-2 TPR_1 LTN1_E3_ligase_6th
Other DBs
NCBI-GeneID: 119785355
NCBI-ProteinID: XP_038143903
LinkDB
Position
Unknown
AA seq 849 aa
MPSLNGKADVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITDPVYEEINNCHERALVFMHKMPRIWIDYCQFVVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETALRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAMRLAAIVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKEEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEFGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIVINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETDERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCMRFADMECKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKASTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELSKQANPDEINIDEDDDEDDEDQGPDEVQLEQKSVPT
AVFGGLKED
NT seq 2550 nt   +upstreamnt  +downstreamnt
atgccttccttaaatggaaaagctgacgttatatttgaggatgatgatcttccatatgaa
gaggagattatcaggaatccatactctgtcaaatgttggatgcgctacattgaattcaaa
cagaatggacccaaatccaccctgaacatgatatatgagcgggctctgaaagaattgcct
ggaagttataaattgtggtacaattatctgagagaaaggaggaaacaagtgaaagggaaa
tgcatcacagatccagtttatgaggagattaataactgtcacgaaagagcactcgtgttt
atgcacaagatgcccaggatttggattgactactgtcagtttgttgtgtcgcaatgtaag
atcacaagaagtcggaggacatttgaccgggctctgagagctttacctgtaacccagcat
ccacgaatctggcctttgtatctacgctttgctcgtaaccttcccctgcctgagacagcc
ctgcgggtgtatcgaaggtatctcaagctatctccagagaatgcagaagagtacatagac
tacttgcggtctgttggtcgtttggacgaagcagctatgcgattagcagcaattgtaaat
gatgaaagctttgtgtccaaagagggcaaatctaactatcagctgtggcacgaactatgt
gatctgatctctcagaaccccgataaagtgacatctttgaatgtcggggccatcatacga
ggaggcctcacacgctttacagaccaacttggaaaactttggtgttctttggctgactat
tacatcaggagtggccactttgaaaaagcaagggacgtttatgaggaagctatccttaca
gtggtaacagtgagggatttcacacaagtatttgatagctatgctcagtttgaagagagc
atgattgcggcaaagatggagaccactgctgagatgggaaaagaggaagaagatgacata
gatctggagcttcgcctggctcgctttgagcagctgattgcacggcggccacttctactt
aacagtgtactactgaggcagaacccccataatgttcatgagtggcacaaacgggtaaaa
ctctatgaaggaaatccgcgacagatcatcaacacgtacactgaagcagttcagactgtg
gatccaatgaaggccacaggcaagcctcattctctctgggtttcttttgccaaattctat
gaggagaatgaacagctggatgatgccaggacaatctttgagaaggcaactaaagtgaac
tacaaacaggtggatgaccttgctgcagtttggtgtgaatttggagagatggagcttcgc
catgagaattatgatcaggcactgcgaatattgaggaaagctacagcaatcccatcaaag
aaagcggagtactttgattcgtctgagccagtccaaaacagagtctacaagtccctgaag
gtgtggtcgatgctggcagaccttgaggagagtcttggtactttccagtctacaaaagcg
gtgtatgaccggattatagatctacgcattgccactcctcaaattgtcatcaattatgcc
atgttcctagaagaacacaactactttgaggaaagctttaaagcatatgagcgagggatt
gccctcttcaagtggccaaacgtttatgacatctggaacacttacctcaccaagttcatt
gatcgttatggtggcaaaaaactggagcgagccagagatttatttgagcaagctttggat
ggctgccctgcaaagtttgcaaagactatttatctgctgtatgccaaactggaagaggaa
tatggactggcgcgacatgccatggcggtctatgaaagagcaacacaggcagtggaaact
gatgagagacaccatatgtttaatatctacatcaagagagcggcggaaatttatggagtg
acttacaccagagctatctaccagaaggctattgaggttcttcctgatgagcatgccagg
gacatgtgtatgagatttgcggacatggagtgtaaactaggtgagattgaccgtgccaga
gcgatctactcttactgctctcagatctgcgacccaagggtgactgcgaatttctggcag
acctggaaggaatttgagatccgacatggaaatgaggatacaattagggagatgttaaga
attaaacgcagtgtccaggctacatacaacactcaggtcaactttatgtcctctcaaatg
ttgaaggcttcaacaagttccacaggcactgtttcagatcttgctcctggtcagatggga
attgatgatatgaaaatgttggagcaaaaagctcagcaacttgctgcagaggctgagcag
gacaaacccaaaccaaaagagaaaattcttttcgtcaggagtgacacgtcacgaagtgag
ttggctgagctttccaaacaagccaatcctgatgagattaacatcgatgaggatgatgat
gaagatgatgaagaccaaggaccggacgaagtgcagcttgagcagaagagtgttccaacc
gcagtttttggaggtcttaaagaggactga

DBGET integrated database retrieval system