Cyprinodon tularosa (White Sands pupfish): 119785516
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Entry
119785516 CDS
T07496
Symbol
patl1
Name
(RefSeq) LOW QUALITY PROTEIN: protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119785516 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctul03019
]
119785516 (patl1)
Messenger RNA biogenesis [BR:
ctul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119785516 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
119785516 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
119785516
NCBI-ProteinID:
XP_038144156
LinkDB
All DBs
Position
Unknown
AA seq
800 aa
AA seq
DB search
MFRFQSLDDDCTLEEEDDGLIEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERDGL
GVGPGLGGGEDASSSLGLPSSSVQLSSSSSGLPTQDVDERSGGSDLAESLARFILDADPA
IAGVGAAERPAPSPGSAGSVLSALRGLDQSRVLQQPSSMAPKQPPQHQLLPGGSGLPPPS
MLSYQQQQHLLLRGSAPMSQMNSHNIWENSMGFGPLSVTPKLVPHMEEGSLMSIIKEAGL
PKRPPQGRADEGHDLSERAPPPRSSSPVIGSPPVRAVPIGTPPKHPMSLNHQIHHPTAVH
VRAPIQHRYPAPFPERLSPNTLLNIANSPLCRGPFPPRVGPVLSQLQRAQLLNSQVAGFP
RGGPGPPLLAGGGFRPFFGGPPPPHGHRMGPPPPHGPHNHTAPIRHNTTHLHPQHRRLLT
QRMQSRGGDRGRTGLDRRSRDPYSNLMSQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYE
KMEKRQERERDSSSKKEHATKLITPQVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDA
VVTTRSDDEEKREKQVWNKRRQILYTVEKMYSLLLEVQDFEKRFVQTPEEEREALLEQHK
TNTEQLCSSLQEKEWEDRVSDEQCVMIMSVRKGKRLIARLLPFLPASQGAAVVMVIARNL
PALAKKDKQDQVLCCLVEPVSAVIQSLSSSALTDLLQELQGGDGQLAGVLQNKFGVTLLY
LILSEGERMQSSDPNCQLMDDNRWTELVFSVTRELLGVPSSSLSPPLFTPPNLLSLFSRY
VDRQRLELLQDKLQISASSR
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgacgactgtacattggaggaggaagatgatggactg
attgaggaggaagatgaaatcgaccagtttaatgatgacacctttggagccggggccatc
gatgacgactggcaggaagagcacaaacgcctggcggagctcgatgagcgggacgggtta
ggagtcgggccgggattaggaggaggagaggacgcctcgtcctcactcggtctgccttcg
tcttctgttcagctctcctcgtcttcctctgggctgccaacacaagatgtggacgaacga
tcggggggaagcgacttggccgagtctctggctcggttcattctggacgctgacccggca
atcgctggggtcggggcagcagagaggcccgctccctctcccggctctgcggggtcggtt
ctgtctgccctgcgaggactggatcagtccagagtcctgcagcagccctcctccatggct
ccaaagcaacccccccagcaccagctgctcccaggaggctcaggccttcctcccccctcc
atgctcagctatcagcagcagcagcacctgctgctccgaggttccgctccaatgagtcag
atgaactctcacaacatctgggagaacagcatgggctttggaccgctcagtgttacgcct
aaactggtaccgcacatggaggaaggctccttgatgtcaataatcaaagaggcggggctt
cctaagcgtcctcctcaggggcgggccgatgaagggcacgacctgtcagagagggctccg
cctcctcgctcctcttctcctgtgattggctctccgccggtgagggcggtgcctattggg
accccacccaagcaccctatgagcctgaaccatcagatccaccatcccacggcggttcat
gtgagagccccgatccagcaccgataccctgcccctttccctgagcgcctgtcccccaac
acgctcctcaacatagctaactctccgttgtgtcgcggcccgttccctcccagagtcggc
ccggttctgtctcagctccagcgagcgcagctgcttaattctcaggtggcaggctttcct
cgcggtggccccggtcctcctctgttagctggtggaggtttcaggcctttctttgggggg
ccccctccgcctcacggccacaggatgggtcccccgccgcctcacggcccccacaaccac
acagctcccatcaggcacaacacgacgcacctccacccacagcaccgccgcttgctaacg
cagcgcatgcagagcagaggaggtgaccgaggcaggacaggcctggaccggcgcagcaga
gacccctacagtaacttgatgagtcagaaggagaaggagtgggtgactaagatccagatg
atgcagctgcagagcaccgacccttacctggacgactattactaccagaactactatgaa
aagatggagaaacggcaggagagggagcgagacagcagcagcaagaaggaacatgccacc
aagctgatcactccgcaggtcgccaaggtggaacacacctacaggccagttcagtttgca
ggatctctagggaagcttacagtgtccagcgtgaacaacccgcgaaagatgatcgacgcc
gtggtgacgactcgctccgacgacgaggagaagagagagaagcaggtttggaacaagagg
cgtcagatcctctacaccgtggagaagatgtacagtttgctactggaggtccaagacttc
gagaaacgttttgttcagactccagaggaggagagggaggccctgctggagcagcataag
accaacacggagcagctgtgcagctccctgcaggagaaggagtgggaagacagagtgagt
gatgagcagtgcgtgatgatcatgtcagtgaggaagggcaagcggctcatcgccaggctc
ctccccttcctgcccgcatcccagggtgctgccgttgtcatggtgattgctcgcaacctc
cctgccttggcgaagaaggacaagcaggaccaggtgttatgctgcttggtggagccggtc
tctgcagtcattcagtcgctgtccagctccgccctcacagacctgctgcaggagcttcaa
ggtggcgacggtcagctggccggcgttctgcaaaacaagtttggagtgacgctgctgtac
ctgatcctaagtgaaggagagcggatgcagagttccgacccaaactgccaactcatggat
gacaatcgatggacagagttggtgttttcagtgacgagggagctgctcggcgtcccgtct
tcgtccctctcccctcccctcttcactcctcccaacctgctctctctgttctcgcgctac
gtggatcggcagcggctggagctgttacaagacaagctacagatctcagcttcatccagg
tag
DBGET
integrated database retrieval system
