KEGG   Cyprinodon tularosa (White Sands pupfish): 119785908
Entry
119785908         CDS       T07496                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
ctul  Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ctul00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119785908 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ctul03041]
    119785908 (snrnp40)
Spliceosome [BR:ctul03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    119785908 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    119785908 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_IFT140_2nd WD40_like WDR54
Other DBs
NCBI-GeneID: 119785908
NCBI-ProteinID: XP_038144777
LinkDB
Position
Unknown
AA seq 347 aa
MIEPMKRAADMAVVPSAMKRPRMELVAAAQSQQLVATGPPRTSSLQAPIMLMSGHEGEVY
CCKFHPNGATLASSGFDRLILMWNVYGDCDNFATLKGHSGAVMELHYNTDGSLLFSASTD
KTVGVWDSETGERIKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTVKLWDIRKKGAIHTF
QNTYQVLTVTFNDTSDQILSGGIDNDIKVWDLRQNKLIYNMHGHGDSVTGLSLSSEGSYL
LSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVVFHPEEPIVLSGASDKRLYMGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgattgaaccgatgaagagagccgccgacatggcggtggttccctccgccatgaagcgg
ccccggatggagctggtggcggcggctcagtcccaacagctcgtggccacgggccctcca
cggacctccagcctgcaggctcccatcatgctgatgtcaggccatgagggagaggtctac
tgctgcaagtttcaccccaacggagccacgctggcctcttcaggatttgacagactcata
ttgatgtggaacgtctatggagactgtgataattttgccactctgaagggacacagcgga
gccgtaatggagctgcattataacacggatggcagcttgttgttctcggcaagcacagac
aagactgtgggggtgtgggacagtgagacaggtgagaggatcaagcgtctgaagggccac
acttcctttgtgaacacctgctaccctgctcggcgggggccccagcttgtgtgcactggc
agtgacgatgggaccgtaaagctttgggacatccgcaagaaaggggccatccacactttt
cagaatacttaccaggtgctgactgtgaccttcaatgacaccagtgatcagattctgtct
ggtgggattgacaacgatatcaaggtgtgggatctgcggcagaacaagctgatctacaac
atgcatggccatggcgactctgtgacgggactcagcctgagctctgagggatcgtacctt
ctgtcaaactccatggataacactgtgcgaatctgggatgtccgaccgtttgcaccaaag
gaaagatgcgtgaagattttccagggtaacgttcacaactttgaaaagaacctgctgagg
tgctcctggtccactgatggcagtaagattgcagccggatctgctgacagatttgtgtac
atctgggacaccacatccaggagaatcctctacaagctgccgggtcacgccggctctgtc
aatgaggtggttttccacccagaggagcctatagtgctgtcaggcgccagtgataaacgc
ctgtacatgggagaaatccagtag

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