Cyprinodon tularosa (White Sands pupfish): 119786165
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Entry
119786165 CDS
T07496
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ctul03000
]
119786165 (rc3h1b)
04121 Ubiquitin system [BR:
ctul04121
]
119786165 (rc3h1b)
Transcription factors [BR:
ctul03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
119786165 (rc3h1b)
Ubiquitin system [BR:
ctul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119786165 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
Prok-RING_4
zf-CCCH_4
zf-C3HC4_2
FYVE
zf-CCCH_UNK
zf_CCCH_4
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
119786165
NCBI-ProteinID:
XP_038145249
LinkDB
All DBs
Position
Unknown
AA seq
1127 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETIRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDTQNYEVARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWDQLEKGLVAVKTVVQGLVDFIQHHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARSGVGVFFSEDGLTPDVAVTRKPSP
VTNGSGAQLVARGTDTVSYELLPKQVKVDEGNPSVPGSPPDVLDSMPKTGIPLPPHAMAH
PRMPADHLSGVKHISGVPRGSPVYPQPQPRDVYDIRPPPASQYEPPQYPAGYPYQQPTQY
VPREYILNPPPPNESGPPYHDPYTGYSTPERAYPSQHSGPPFPYTHPSHYDRSHHGAYGA
PPPPPQPYPSGRDPLVKMNQAPLDVPPPSAGQTSSLYHEGPGSRDRYAPDGYYPQGSQPP
AMRAYVRGSYSGSQPSLDYLHRRRQELLSQLAERKVISPPPFAASPTLSHPFPSDYPTEY
DDSSKGMVKCRDSNYAGQYSPWSCETIGSYINTKDAKPKNVMVPGTMEMMQNVEDKGQRE
PSLEAPRRGTEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTFPVQAMASTPQNPNSK
HMTMPEYSYGSHGGWGGASYPSHQTASSSQGHFIERLPMSTPDREQLKIELQQVNQQITQ
QTQMHNMEAAGNSLLLQREASALGGQPVQPSQSKTAVVPQQPQPKWPAGGASVSVSNEQL
SLELHQVEREIGKRTREMALQENQVTHDVQQYKMQSAENGQPEHESQLEEMSLALGEVSN
GSSSLPENAVGGSMLSLANKTATLSLCSDPVVTGSEMQKNGVVHSCS
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaagcgccacaatggacagagttcctgctgtgcccgatctgcacgcagacg
tttgaggaaactatccggcggcccatcagtttgggctgcggacacactgtgtgcaagatg
tgcctaaacaagctgcaccgcaaggcctgtcctttcgaccagacggccatcagcacagac
attgagcagttacctgtcaacacagcccttttgcagctggtgggaggccaggttcccaag
gctcagccggttgctttgattacaagtccagaggacactcagaactatgaggtggcgaga
caatgtgtggaagagctggccctttacctcaaaccccttagcaacaccagaggtgtgggt
ttgagcagcacagcccaaagtatgctgagtcgacccatgcagaggaaactggtgactttg
gtccactgccagctggtggaggaggagggacgagttagagctatgagagctgccaggtct
cttggcgagcgaacggtcaccgaactcattttgcagcaccagaacccacagcagctctcc
tctaatctgtgggcagcagtccgtgcacgaggttgtcagtttcttggaccagcaatgcag
gaggaagccctcaagttggttcttcttgctttggaggatggttctgctttgtccaggaaa
gtgctggttctgttcgttgtccaaaggcttgaaccacgcttccctcaggcctctaaaacc
agtataggccatgtggtacagctcctctatagggcttcttgcttcaaggttaccaaacgg
gatgaagattcgtccctcatgcagctgaaagaagagtttcgtacttatgaggctctgcgg
cgagagcatgactctcagatagttcagattgcaatggagggtggattgcgcattgcccct
gaccagtggtcttctctgttgtatggagatcagtcccacaagtcacatatgcagtctatt
attgataagctgcagaccccggcatcttttgctcaaagtgtacaggagctgacgattgca
ctgcaaaggactggagacccagccaacctcaaccgactaagaccccacttagaactgctg
gcaaacatcgatcccagtcctgatgctcctcctccgacatgggaccagctagagaagggg
ttggtagcagtgaaaacagtggtacagggtttggtggacttcattcaacaccacagcaag
aaaggagctgatcctcaacagcctcctcagcacagcaaatacaagacatacatgtgccgc
gacatgaagcagaaaggagggtgtccgcgtggagccagctgtacctttgcccactctcag
gaagaactagagaagtatcgtaagatgaataagcggctggcggctcgctcaggagttgga
gtgtttttctcagaagatggccttactcctgatgtagcagtgacccgaaagccttcacca
gtcaccaatggcagcggcgcacaattagtcgctcgcggcaccgacacagtctcatatgag
ctgttacctaaacaggtcaaggtggatgaaggaaatccaagtgtcccgggatcaccgcct
gatgtcctggactccatgcccaaaaccggtataccactgccacctcatgcaatggctcac
ccaaggatgccagcagatcatctctcaggggttaagcatatatctggggttcccagaggt
tccccggtttatcctcaaccacaaccccgtgacgtatatgacattcgtccgccacctgcc
tctcagtatgagccgccacagtacccagcaggttatccctaccaacagccaacacagtat
gttcctcgggaatacatccttaacccccctcccccgaatgagtcaggacccccttaccat
gacccttacacagggtacagtactccagagcgcgcctacccatctcagcactctggccca
cctttcccctatactcacccttctcactatgatagaagtcaccacggtgcctacggtgcc
cctcctcctccccctcagccttatccatctgggagggatccccttgtcaaaatgaatcag
gctccccttgatgttcctccaccctcggcggggcagaccagctccctctaccatgagggg
ccaggttcccgggacagatacgctccagatggttactacccacaaggttcccagcctcca
gccatgagggcttatgtcagggggtcgtacagtggttcacagccaagcctagactatctc
catcgacgacggcaggaactgttatctcagctggcagaaaggaaggtgatctcccctcct
ccgtttgctgcctcccccacgctttctcatcctttccccagcgattaccccactgagtat
gatgacagctcaaaagggatggtgaaatgcagagattcgaactatgcagggcagtattcc
ccctggtcctgtgaaaccattggctcctatattaacacaaaggatgccaaacccaaaaat
gttatggttcctggtaccatggagatgatgcagaatgtggaggataaaggtcaaagggaa
ccctcattggaggctcctcggaggggaacagaagtgaaagatgatgaccctattatacct
tttggcccacagccgactgtgtcacgcttcggtgccatctctcgcacttcaaagacaggc
taccagaccactttcccagttcaggctatggcttccactccccaaaacccaaactctaaa
cacatgaccatgccagaatactcatatggaagtcatggaggatggggtggtgcttcatac
ccctcccaccagactgcctcttcctctcagggacattttattgagcgccttcccatgtca
accccagacagagaacagctaaagattgagctgcaacaggtcaatcagcagatcacccaa
caaactcagatgcacaacatggaggcggcaggtaactctttgctcctgcagagggaggcc
agcgcattggggggccaacctgtgcagcccagtcagagtaagacagcagttgtaccacag
caacctcagcccaaatggccagcagggggtgcaagtgtgtcagtctccaatgagcagtta
agcttggagctccaccaggtggagagagaaatcggcaagaggacccgtgagatggctttg
caagaaaaccaggtaactcatgatgttcagcagtacaaaatgcagtctgcagagaatgga
cagccagagcatgagagccagcttgaggaaatgtctctggctctgggcgaggtgtccaac
ggctccagtagtctgccagaaaatgcggtgggcgggtccatgctgtcactggccaataag
acagcaacactgagcctgtgttctgatcccgtcgtcactgggtcagagatgcagaaaaac
ggcgttgtccattcctgctcatag
DBGET
integrated database retrieval system
