| Entry |
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| Symbol |
upf3b
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| Name |
(RefSeq) regulator of nonsense transcripts 3B isoform X1
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| KO |
| K14328 | regulator of nonsense transcripts 3 |
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| Organism |
ctul Cyprinodon tularosa (White Sands pupfish)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:ctul00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119786305 (upf3b)
03015 mRNA surveillance pathway
119786305 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:ctul03019]
119786305 (upf3b)
Messenger RNA biogenesis [BR:ctul03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119786305 (upf3b)
mRNA cycle factors
P-body specific factors
119786305 (upf3b)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
Unknown
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| AA seq |
463 aa
MKEDKENTRPKEKKVEIRCEDGEKTEKCKEKKETMTKVETASRAVIASSSCLKIVIRRLP
PNLTKEELEEQLQPLPEVDYMEFFSNDTSLFPHLFARAYISFKNQEDIVLFRDRFDGYVF
IDNRGQEYPAIVEFAPFQKTAKKRSKKKDSKCGTIIEDPDYKRFLEYYNGDEEKLTSTPE
TLLEEIEARSKELEAKKTTPLLDFLKNKQRLREEKKEERKRRELERKRIRDEERRKWREE
ERRKRKEAEKMKRLEKPLENKDKEQNKEEPKIKLLKKPDRNEDGDSEKPKEKFKKPEKPH
REDRPSGGPDHRRRQNLGSREDRERKGYEDGRKEFRERDLEREKEREHRQREKERIRRQD
EERRRRREQQDGENTCRKREEELKKEKALERRRSENSADSPHSENKKEESGKRERVRNKD
RPAIQLYQPGARSRNRTAGGAESSSADRKPEPDNKKAGDRGDD |
|---|
| NT seq |
1392 nt +upstreamnt +downstreamnt
atgaaagaagacaaagaaaacacgcgaccgaaggagaaaaaagtcgagataaggtgtgaa
gatggagagaagacggagaagtgtaaggagaagaaggagaccatgacaaaggtagaaact
gctagcagagctgttattgctagcagcagctgcttaaagattgtgatcaggaggttacct
cctaatctaactaaagaggagctggaggagcagctgcagcctcttccagaggtggactac
atggagtttttctccaacgacaccagccttttcccccatctcttcgccagagcttatatc
agtttcaaaaatcaggaggacattgttctcttcagggatcgattcgatggatatgtcttc
atagataacagaggacaggagtatcctgccatcgtggagtttgcccctttccaaaagaca
gctaagaaaagaagcaagaagaaggactcaaaatgtggaacaattattgaagatcccgat
tataaaaggttccttgagtattacaatggagatgaagagaagctgacgtcgacgccggag
actctgctagaggagatcgaggcaagatcgaaggaactggaagccaaaaaaacaactcct
ctgctggactttctgaagaacaaacagaggctgagggaggaaaagaaggaggagagaaaa
aggagggagcttgagcggaagcgaatacgtgatgaagagcgccgcaagtggagggaagag
gagcggaggaaacgaaaggaggcggagaagatgaaaagacttgagaaaccgctggagaat
aaagacaaggagcagaacaaagaagaacccaaaattaagctcctgaagaagccggacaga
aatgaggatggagattctgaaaaacccaaggagaagttcaagaaaccggagaagccacat
agagaggaccgaccctcagggggccctgatcacaggaggaggcagaacttaggcagcagg
gaggatcgagaaagaaaaggatatgaagatggccggaaggagttcagagagcgtgatttg
gagcgagagaaggagagggagcaccggcagagagagaaggagcgcatccgacggcaggac
gaggagcggcggagacggagggaacagcaggacggggagaatacgtgcagaaaacgggag
gaggagctgaaaaaagaaaaggccttagagaggaggagaagtgagaactctgcagactcc
cctcactccgagaacaagaaggaggagagcggtaaaagggagcgagtgcgtaataaggac
cggcccgccattcaactgtaccagccgggggccaggagccgcaaccgcacggcaggagga
gcagaatctagctctgccgaccggaaaccagagcctgataacaagaaagcaggagacaga
ggagatgactga |
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