Cyprinodon tularosa (White Sands pupfish): 119787122
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Entry
119787122 CDS
T07496
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
119787122 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctul03400
]
119787122 (lig3)
Enzymes [BR:
ctul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
119787122 (lig3)
DNA repair and recombination proteins [BR:
ctul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
119787122 (lig3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
119787122
NCBI-ProteinID:
XP_038146689
LinkDB
All DBs
Position
Unknown
AA seq
1012 aa
AA seq
DB search
MWRNLNLLIHKTVYLGQQPFRTLIKCWQPKTFWKAFFISSYTKHLPSPVHLKTSKTKQHS
TSAFRKHYFLQRHTPWTFFQQRYTEQPDMSEQRFLVEYAKRGTAGCKKCKDKIQKGIVRI
GKIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDLTELEGWEELQDEDKDLINK
HVSDLMAKVNASPKKKVQAKLNTSCQFKTPPADPSVNAPRKFSGFTAAKAGSSGSSSSPG
PSPSPAKAEGGSPLSAQLCDPQHKDCLFREFRKLCATVAENNSYNTKTQIIEKFLRKGAG
GDKFHGDLYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFRSNQDDMVRDLDQGDVSETVR
MFFEESKSFPPAAKSLLTIQEVDASLTRLAQLTKEDDQQSELESIAKKCTSNDLKCIIRL
IKHDLKMNAGAKHVLDAVDLNAYDAFKASRNLADVIERVLRNQQEASNGSGPRKLLTVEA
SLMTPVQPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGNTFSYFSRSLKPVLP
HKVAHFKEYIPQAFPGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDANVCLFVF
DCIYFNGVSLMERPLCERRKFLHDNMTEVPNRILFSEMKHVTRAADLADMITRVIREGLE
GLVLKDIKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGC
YDPDSRKWCTVTKCSGGYDDAMLARLQKELDVIKISKDPSKIPGWLKIVKNYYPDFIIRD
PEQAPVWEITGAEFSKSEMHTADGISIRFPRMTRIRDDKDWKTATNLHQLRELFRISKEN
CDFKVTAGPSASNDDKGSSGGDSGGNSPSPSSNAGGPSKKTRNSTPSKPKAVKSEPRTPK
SEAPSAKKVKKSDPNVQSNGQSKETAQLLQPRNDKTLLDIFTGVKLFLPVSVQEFDKLRR
YFVAYDGDLVPDYDASLATHTLGDPEEDSGAQKVSPSWIWECIRKRRVVPPC
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgtggagaaatcttaatttgttgattcataagactgtctatttgggccaacaacctttt
cgtactctaattaagtgttggcaacccaaaacattttggaaagcgttctttatttcttcc
tacactaaacacctgccctcacctgttcacctaaaaacctcaaagacaaagcagcattcc
acctcagcatttaggaaacactattttctgcagagacacactccctggactttcttccag
cagcgctacaccgagcagccggatatgtctgaacaaaggttcctagttgaatacgccaaa
cgcggcaccgcggggtgcaagaaatgcaaggacaaaattcagaagggcatcgtgcgcata
gggaaaatcgtgccaaatcctttcagtgagtctgctggggagatgaaagagtggtatcac
gtgaagtgcatatttgagaagctggagagggcgagagccacgacgaagaagatagaagac
ctgacggagctagagggctgggaggagctgcaggacgaggacaaagacctcattaataaa
cacgtttcagacctgatggccaaagtcaatgcaagtccgaagaagaaggtccaggccaag
ttgaacacctcctgtcagttcaagactccccctgctgacccctccgtcaatgctccaagg
aagttttccggcttcacggctgcgaaggctggtagctcaggcagctccagcagccccgga
ccatcaccctctcctgccaaagctgagggaggcagccccctgtccgctcagctctgtgac
ccccagcacaaggactgcctcttcagggagttccgcaagctctgtgcgacggtggccgag
aacaacagctacaacaccaagacacagattatagagaagttcctgaggaagggcgcagga
ggagataagttccacggggatctttacctgaccgtcaaactgctcctgcctggtgtcgtt
aaaagtgtttacaaccttaacgataagcagatagtaaaactcttcagtcgcatattcaga
tccaaccaggacgacatggtgcgagatctggatcagggcgacgtgtctgagaccgtacgg
atgtttttcgaagaaagtaaatcctttcctcccgctgctaagagcctcctgacgatccaa
gaggtagacgcatccttgacccgcctcgctcagctcaccaaagaggatgatcagcagagc
gagctggagagcatcgccaaaaaatgcaccagcaacgacctgaaatgcatcatcaggcta
attaagcacgacttgaagatgaacgcaggcgccaaacatgtcttggatgccgtcgatctg
aacgcttacgatgctttcaaggcctcacgcaacctggctgatgtgatcgagagggttctg
agaaaccagcaggaggcctccaatggttctgggcccaggaagctgctcaccgtggaggcg
tcgctcatgacccccgtccagcccatgttggcagaggcgtgcaaatccatcgagtatgca
atgaagaaatgtcccaacgggatgtactcagagattaagtatgacggggagcgcgtgcag
gtccacaagaacggaaacaccttcagctacttcagccgcagcctgaaaccggtgctgcct
cacaaggtggcccacttcaaggagtacatcccccaggctttccccggcggccacagcatg
attctagatgcagaggttctcctgatcgacacaaagaccagcaaaccgcttccattcggg
actctaggtgttcacaagaaagctgcttttcaagatgccaatgtctgcctttttgttttc
gactgcatctacttcaacggtgtgagtctcatggaaaggccgctctgcgaacgcagaaag
ttcctgcatgacaacatgactgaagtcccaaacaggatcctcttctcagagatgaagcac
gtcacgagggcagcagacctggctgacatgataacccgtgttatcagagaaggactggag
ggtctggtgctgaaggacataaagggaacctatgagccggggaagcgacactggctgaag
gtgaagaaggattacttgaacgagggggcgatggccgacactgctgacctggtggtgctc
ggtgctttctatgggaaaggctccaacgggggcatcatgtccagctttctgatgggctgt
tatgaccctgactcgaggaaatggtgcacagtcaccaagtgctccggaggctatgatgac
gccatgttggcccggctccagaaagagctggatgtgatcaaaatcagcaaggaccccagc
aaaatccccggctggttgaaaatcgtcaagaactattatccagatttcattatccgtgat
cctgagcaagcgccggtctgggagatcaccggcgccgagttctccaaatccgagatgcac
acggccgacggcatctccatccgctttccccgcatgacgcgaatccgcgatgacaaggac
tggaagacggccaccaacttgcaccagctcagggagctgttccgcatatccaaggaaaac
tgcgactttaaagtgacggccggtccttccgcgtccaacgacgacaaaggctcatcagga
ggagacagcggagggaactcgccgtccccctcgtccaacgcaggcggtccgtccaagaag
acgagaaacagcacaccttccaaaccaaaagccgtcaaatctgagccccgcacccccaaa
tcagaggctcccagtgcaaagaaggtgaagaagagcgacccaaatgttcagagcaacgga
caaagcaaagaaaccgctcagctgctgcagcccagaaacgacaagactctgctggacatc
ttcaccggggtgaaactcttccttccggtctccgtccaggagttcgataaactgaggagg
tacttcgtggcgtacgacggagacctggtgcccgattacgacgcctccttggccacgcac
acgctcggcgatccggaggaggacagcggggctcagaaagtgtctcccagctggatctgg
gaatgcatccggaagaggcgcgtcgtaccgccctgctga
DBGET
integrated database retrieval system
