Cyprinodon tularosa (White Sands pupfish): 119787973
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Entry
119787973 CDS
T07496
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03440
Homologous recombination
ctul03450
Non-homologous end-joining
ctul04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119787973 (rad50)
03450 Non-homologous end-joining
119787973 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
119787973 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctul03032
]
119787973 (rad50)
03400 DNA repair and recombination proteins [BR:
ctul03400
]
119787973 (rad50)
DNA replication proteins [BR:
ctul03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
119787973 (rad50)
DNA repair and recombination proteins [BR:
ctul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
119787973 (rad50)
BRCA1-C complex
119787973 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
119787973 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ABC_tran
zf-met
AAA_29
AAA_13
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
119787973
NCBI-ProteinID:
XP_038148007
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGVEDKDKQVISFFTPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFSDVNGEKVSIQRSMSCTQKAKNYSFKSLEQVITR
IKDGKKVSLPSKCGELDREMISALGVCKPVLNHVIFCHQEESNWPLSEGKALKEKFDSIF
AATKYIKALETMRQLRLKQNQTVKECQVELRYLKQNKEKAQQIRETVATKEAQLMASKDS
VQQIESQIDPLENRMIEIDQKLGKVMKLDNDIKALDSRKKQMEEDNKELEETMEQVFQGS
DEELQEIYQNHQRTVREKERRLTDCQKELERAGRECQRLNRVKSDLLVEQGRLQQEADRH
TQNIRSRDTLVRSLSSHLEMEGYDRPPFTSLQLESFHRHITQRLEQEKETLRQILADLQG
KEQQKQQSIDELRDKKTGLERTVELKRDMQGKKQQELRNVRADLQKLEGSSSRLQELENE
LAKAEGDLQRAVQSSNVEELRTEIEELHKEKTELNRVQRQLDDDMQTLNAHTTARTQMDM
LKKDKIEKEEQVRKIKSRHGDELVSLLGHFPNKRELEDWIYSKSKEINNTRNRLAKLNKD
LASSEQNKSHITSELRKKEQQLTSDEEKFFSVCGSQDLEQDLGKLQEDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQEVISDMQSKLRLVPDKLMNTEQDLK
RKERKRDEMISLRPVRQSIVQFQEKELPELKNRLQSVNREIERLKADVEEQETLLGTLMS
EEETAKACLQDISLMDRYLMDLQMLERKIAQQSAKLQGVDLSRTIQQVSQEKQETQHKLD
TTSSKMELKRKLIQDQQDQIQILKSAVNETKAEKLQLSSDMQRQQQLEEQCVEFTAEIQA
LTRDIREAKEQLSPLSVALDKLQQEKQELMERKKQTQEEGQEKISVIKERVKAVSMLERD
IKKYVDEGKDEYKEQKESELQETNTQLHEAEKQKEKISKEMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVLAKREALMKDMGNMQVLQLRHERRDAERKLEDLKKNRSIAQGRQKG
FEEEILNYRKELREDQYDKADERYKNKMITMRTTELVIKDLDLYYKALDQTIMKFHSMKM
DEINKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAAVKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITTCSISTLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaatagacaaaatgagcatcctcggggtgcggagctttggggttgaggataag
gacaagcaagtcatcagtttctttacacctttgactgttctggtgggacccaatggagca
gggaaaacgactataattgaatgcctcaagtatgcaacatcgggggaacttcctcctgga
tctaaaggaggagcctttgttcatgatccaaaggatgcccatgagactgacgttcgagct
cagatccgactcttattctcagatgtaaatggagaaaaagtctccatccagcgctccatg
tcctgcactcaaaaagcaaagaactactctttcaaaagcttagagcaggttatcactaga
ataaaagatggtaaaaaagtaagtcttccctccaagtgtggtgagctggacagagagatg
atttctgctttaggagtatgcaagcccgtgctgaatcatgtcatcttttgtcatcaagaa
gagtccaactggccacttagtgagggcaaagcacttaaagagaaatttgactccatcttt
gctgcaactaaatatattaaagctctagagacaatgcgacagctgcgcctcaaacaaaat
cagaccgtcaaagaatgccaagtggagttacgctacctgaagcagaacaaggagaaggct
cagcagatcagggagaccgtggccaccaaagaagctcagctgatggcctccaaagacagt
gtccagcagatagagagccagattgatccccttgagaatcgaatgatagaaattgaccag
aaactggggaaggtgatgaagttagacaatgacataaaggctttggacagcaggaagaaa
caaatggaggaggacaacaaggagctggaggaaaccatggagcaggtgtttcagggttca
gatgaagaactgcaggagatctaccagaaccaccagaggacagtgagggagaaggagcgc
cggctcacagactgtcagaaagagctggagcgagctggtcgggaatgtcagagactcaat
agagtaaagtcggatctcttagttgaacaaggtcgtcttcagcaggaagccgatcgccat
acccagaacatcaggagccgcgatactctggtgcgctctctgtcatcccatctggagatg
gagggttatgaccggccacccttcacttccctgcagcttgaaagctttcatcgtcacatc
acacagagactggagcaggagaaagaaacactcaggcagattctagctgatttgcaggga
aaggagcaacagaagcagcaatctatcgatgaactgagggataagaagacgggccttgag
agaacagtcgagttgaagagggatatgcaaggaaaaaagcaacaggaactaaggaatgtc
agggcagatctgcagaagcttgaagggtcctctagtcggctgcaagagctggaaaatgaa
ttggccaaagctgaaggggatctgcaacgtgccgttcagagttccaacgttgaagagctg
cggactgagattgaggaacttcacaaagagaaaacagagcttaaccgagtgcagaggcag
cttgatgatgatatgcagacgctcaatgcgcacacaactgctcgcacgcagatggacatg
ctgaagaaagataaaatagagaaggaggagcaggtacgcaaaataaagtctcgtcacggt
gacgaactggtgtccctcttgggccattttcccaacaagcgagagctggaagattggatc
tattccaagtctaaggaaatcaataacaccaggaacagacttgctaaacttaacaaggac
ttggcatcaagtgagcagaacaaaagtcatattacttcagagttgcgcaagaaggagcaa
caattaaccagcgatgaagagaagttcttcagtgtttgtggcagtcaagatctggagcag
gatttgggaaagctgcaggaagatctggagaagatatccaaacaaagagccatgttagca
ggagctacagcagtgtacacccagttcatcagccaactgacagaggagagggagccctgc
tgccctgtctgccagaggacttttccttcagaatctgatctgcaggaagttatcagcgac
atgcaatccaagctacgactggttcctgacaagctgatgaacacagagcaggacctgaag
agaaaggagaggaagagggatgaaatgatctctctcagacctgtgagacagtccattgtt
caatttcaagagaaggagctgcctgagctgaagaaccggcttcagagtgtcaacagagaa
atcgagaggctcaaggctgatgtagaagagcaggagactcttcttggtaccttaatgtct
gaggaggaaactgcaaaggcctgcctgcaagacatatctctaatggacagatacctgatg
gacctgcagatgctggagagaaaaattgctcagcagtcagctaaactccagggagtagac
ctgagcagaaccatccagcaagttagtcaggagaaacaagaaacccagcacaaacttgac
accacttctagcaaaatggagctgaaacgcaagctgatccaagaccagcaggatcagatt
cagatcttgaaaagtgccgtcaatgaaacgaaggcagagaagctccagcttagcagcgac
atgcagaggcagcagcagctggaggagcagtgtgttgaattcactgcagagatacaagct
ttaacgagagacatccgggaagcgaaggagcaactgtcccctctatctgttgctttggat
aagctgcaacaagagaaacaagagctgatggagcgcaagaagcagacacaggaagaaggc
caggagaagatcagtgtcataaaagagagggtcaaagccgtctccatgttggagcgagac
atcaaaaaatacgtagatgaaggaaaagatgaatataaagagcaaaaagaatcagagctt
caagaaaccaacactcaactccacgaggctgagaagcagaaagagaaaattagtaaggag
atgggaaacatccgtcaggacatagacactcaaaaggttcaagagcgctggttgcaagac
aatctaacattacggaagcgggttgaggagttgaaggaggttctagctaaacgagaagct
ctcatgaaagacatgggcaacatgcaggtgctgcagctgcgccatgaacgtcgtgatgca
gaacgcaagttagaggatttgaagaagaaccggagcatcgcgcagggtcggcagaaaggc
tttgaagaagagatactgaattacagaaaagagttgagagaggaccagtatgacaaagct
gatgagcgctacaaaaacaagatgatcacgatgaggaccacagagttggtcataaaggac
cttgatctctactacaaagcccttgatcaaaccatcatgaaattccacagtatgaaaatg
gatgagatcaataagattattagagacctgtggcgcagcacatacaggggtcaagatatc
gagtatgtggagatcaggtcggatgtggatgagaattcatcggctgcagtaaagaggagg
gtttacaactacagagtagttatggtgaaaggagatacagctttggatatgagaggacgc
tgcagcgctggccagaaggtgctggcatccctgatcatccgtcttgccctggcagagacg
ttctgtctgaactgtgggattttggccttggatgagcccaccacaaacctggacagagag
aacattgagtctctggctcatgccctcgtggaaatcatcaagagtcgttctcgtcagcgt
aacttccagctgcttatcatcacccacgatgaagactttgtggaactcctgggccgctcc
agctatattgagcacttctatcgaatccgcaagaaccaggaccagaactcggaaatcacc
acgtgcagcatctccaccctctcatcatatctccattga
DBGET
integrated database retrieval system
