Cyprinodon tularosa (White Sands pupfish): 119788164
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Entry
119788164 CDS
T07496
Symbol
ptbp1a
Name
(RefSeq) polypyrimidine tract-binding protein 1a isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctul03019
]
119788164 (ptbp1a)
03041 Spliceosome [BR:
ctul03041
]
119788164 (ptbp1a)
Messenger RNA biogenesis [BR:
ctul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
119788164 (ptbp1a)
Spliceosome [BR:
ctul03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
119788164 (ptbp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
119788164
NCBI-ProteinID:
XP_038148259
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MDGRLDATELYPLGSGYVPEIDSVHDISVGTKRGSDELFSSCISNGPYIMNSANGNDSKK
FKGDVRSPGVPSRVVHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLELNSEEC
AQTMVSYYSSVTPVIRNQPIYMQYSTHKELKTDNSPNQVRAQAALQAVNALHGGGMASMA
IPTDASSMAGGVAQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALI
QYADAMTAQHAKLSLDGQNIYNACCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTADSH
PSLDHQTMAAAAFSAPGIISASPFGGAHGFPPTFAFQQAGLSVPGIPSALASLGMGHTGM
AAAAAAAASRLGLSGLGATGGHNVLLVSNLNPETVTPHCLFILFGVYGDVMRVKILFNKK
ENALVQMSDGTQAQLAMSHLNGQRLHGRAMRVTLSKHTTVQLPREGHEDQGLTKDYSNSP
LHRFKKPGSKNYSNIFPPSATLHLSNIPPSVMEDDLKRLFASSGATVKAFKFFQKDRKMA
LIQMGSVEEAIECLIEFHNHDLGENHHLRVSFSKSTI
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgtttagacgccactgagttgtaccctctgggatccggctacgtccctgaa
attgacagtgtccatgacatatcagttggcacaaagaggggatctgacgaactcttttct
tcctgcatatccaacggaccctatatcatgaactcagccaatggcaacgacagcaaaaaa
ttcaaaggagatgtccgcagtcctggtgtcccatcacgtgtggtccacgtacgcaaactg
cccaatgacatcaacgaggctgaggttataagcctgggactgccttttgggaaggtcact
aatctgctgatgttgaaagggaaaaatcaggcctttctggagcttaacagtgaagagtgt
gcacagacgatggtgagctactattcttctgtcactcctgtcatcagaaaccaacccatt
tacatgcagtactcgactcataaggagctcaagacagacaactctcctaaccaagtgcgt
gcccaggcagctctgcaggcagtcaacgccctgcatggaggtggaatggcgagtatggcc
atccctacagatgcaagcagtatggcaggaggcgtagcccaaagccctgttctcagagtc
attgtggaaaaccttttctaccccgtcaccctggacgtcctgcatcagattttttcaaag
tttggaactgtgctcaagatcatcacttttaccaagaacaaccagttccaggcattgatc
cagtatgctgatgccatgacagctcagcatgctaaactgtctctagatggccagaacatc
tacaatgcttgctgtaccctgagaatcagcttctcgaagctgacaagcctcaatgtcaag
tacaacaatgacaaaagcagggactacacccgccctgaccttcctacagcagattcacac
ccctcactcgaccaccagacaatggcagctgcagccttttctgcaccgggtataatctct
gcttctccctttggtggagctcatggcttccccccaacgtttgctttccagcaggctggt
ctgtcagttcctggcattcccagtgccttggcatccctgggtatgggtcataccggcatg
gcagccgctgcagcggccgcagctagccggcttggcctgtcagggctcggtgccactggg
gggcacaacgtgctgttggtcagcaatctgaaccctgagaccgttacgccacactgcctc
tttattcttttcggcgtgtatggtgatgtcatgagagtgaagatcctgttcaataaaaag
gagaacgctctagtccagatgtctgatggcacacaggctcagctagccatgagccacctg
aatggccagcgtcttcatggcagggctatgcgcgtgacgttgtcgaagcatacgacagtc
cagctgcccagagaaggccatgaggaccagggtcttaccaaggattacagcaactcccca
cttcatcgcttcaagaagcctggctccaaaaactactctaacatcttccctccatctgca
acactccacctctccaacataccaccttcggtgatggaggatgatctcaaaagactcttt
gcaagctcaggagccacagtcaaagccttcaagttctttcaaaaggaccgcaagatggcc
ctgatccagatgggctctgtggaggaggcgatcgagtgcctcatcgagttccacaaccat
gacctaggagagaaccatcaccttcgagtgtccttctcaaagtccaccatctga
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