Cyprinodon tularosa (White Sands pupfish): 119788340
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Entry
119788340 CDS
T07496
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
119788340 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ctul01009
]
119788340 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ctul04515
]
119788340 (pcdh11)
Protein phosphatases and associated proteins [BR:
ctul01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119788340 (pcdh11)
Cell adhesion molecules [BR:
ctul04515
]
Cadherins
Protocadherins
119788340 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
DUF6249
Motif
Other DBs
NCBI-GeneID:
119788340
NCBI-ProteinID:
XP_038148535
LinkDB
All DBs
Position
Unknown
AA seq
1317 aa
AA seq
DB search
MNLASQVHVLVALLACLVSLCKAQERDYIVKEEQPENVRIGNLRKDLDLNLDPTIRLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTNHRIDREKLCSGVFTEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVNEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGSPPKSSTAILQVTIS
DVNDNRPIFRDNELEVEVPENAQMGTSVAQLHATDADLGSNAQVHFSFSNQISSSTKRHF
AINSSTGLITVKQPLDREVTPVHKLIVLASDGSSTPSRATVTVNVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLYGKVACYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGHNAEIIYTLGPDAPDGFNIDRRSGILSVGKRLDREKQERYSFTV
MARDNGSTPLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNAVITLSVLNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAVDAGQPPSSSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTTTTPGSVVTRVFAIDNDTGMNAELQYSIISSII
VTSRVSPRGLFSIDKTTGNITLQEKIVLADVGLHRLVVKVKDLGQPESLHAIALVHLFVN
DTVSNSTFIQEQLRKSMETPLDRNIGDNEITPQANGYVIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQENRQIKKKKKRKKRSPKSLLLNLVTIDESKPEDP
THEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDPYSVSECGCQGGFKTSGQIATRQNPGQ
TPEKSFNSTSPICKSQDLNPVEHLWDVVERDVCIRDMQPTNQQQLCDEACQLGKITSVNL
DYLVRNIRNHSSNWDFSNNYLLQTQRRVTFHLPDGSQESCSDSGLGDADPSSTASATQPL
PLSFPREEYYEQTSPNSRTEGDGNSDPESTIEVNLKKALAEASETCTQECLILGHSDSCW
MPPTLAHFQSPGTNSPTSTPTTTISAAALPSFGFQGVKANIGGMGVMDGRHTLGRSVPKR
DELDKGFSRPQFYNTLDRHCSSKKEDPVKVIPLASFSSPGQHTPTGGSSSFLNEHQL
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atgaacttggcaagtcaggtgcatgttctggtggccttgctcgcctgtttggtctcatta
tgcaaggcccaggagagggactacatcgtgaaggaggagcagccagagaacgttcggatt
ggaaatctgcgcaaggacctcgaccttaacctggacccgactatcaggctgtcctctccg
ctgcagttcaagcctgtttataagacaggtgacgtgcctttggtgagggtggaggccaac
acgggggagattttcaccaccaatcacaggattgaccgggagaagctgtgctcgggggtc
ttcacggagaaacgctgctactatgagatcgaggtggcagtgctgcccgatgagatcttt
cggctggttaagatccggttcctgattgaggatgtgaacgacaatgcaccccttttccag
tccactgtcataaacatctccatccctgagaacacagctattaacacccgctacccggtg
ccatcagcatttgaccctgatgtagggatcaatgggatccaacactatgagctggtcaag
agtgtcaatgagtttggcttagacatcattgaaacccctgaaggtgacaagtggccccag
ctcattgttcagcagaaccttgatcgggagcaaaaagacacctttgtgatgaagatcaag
gtggaggatggtggcagcccccctaaatctagcactgctattctccaagtaaccatttct
gatgtcaatgacaatcgtcctatcttcagggacaatgaattggaagtagaagttccagag
aacgctcagatggggacttcagtggctcagcttcatgcaacagatgcagacctaggatcc
aatgcacaggtccacttttcattcagcaaccagatctcctcatcaaccaagcgtcacttt
gccatcaatagttctactggactaataactgtaaagcaacctctagaccgagaggttact
cctgttcataaactcattgttctcgcaagtgatggcagctcaaccccatcaagagccaca
gtgactgtcaatgtcacagatgttaatgacaatgttccttccatagacactcgctacatt
atcaacctggtaaatgggactgtcctactgtctgagaatgctcctttgaacaccaaaata
gcccttattaccgttactgacaaggatgcagatttgtacggaaaagtggcttgctacact
gaccatgatgttcctttccggctaaagcctgtatttaatgatcaattcctactggagaca
gctgcccctctagattatgagaccactcgtgaatacgctattaagatagtggcttcagac
agaggaacgcctcctttgaacacttcagctatggtcttaattaaaatcaaggatgagaat
gacaacgcaccaattttcccccagccggaaattcaactttcaataccagagaacaatgat
ccctcaactcagttaataaaaatcagtgccactgatgcagatagtggacataatgctgag
atcatttatactcttggccctgatgcaccggacgggtttaacatagacaggcgctcagga
attctctctgtagggaagcgactggacagagagaagcaagagaggtactcattcactgtc
atggcaagagacaatggctcaacacccctgcagagtaatgtcactgttaggctaattgtg
caggaccttaatgacaacagcccagctttcacacaccctgaatacaacttctatgtgcct
gagaacctgcctctctatgggacagtaggcttgatcacagtgacagatgcggacgctgga
gataatgctgtcattactttgtctgttttgaatggcaaagataattttatcattgacccc
caaactggtgtgatcaaaccaaacatcacctttgacagggagcagcaaagctcctataca
ttcatggtcaaggcagttgatgcagggcagccaccaagttcctcctatgctaaggtcaca
attaatgttgtcgatgtgaatgacaatcgccctgtgtttgtcatcccatcctccaattat
tcatatgacctggtgcgaaccaccaccacaccaggttctgtggtcacaagagtgtttgcc
attgacaatgacacaggtatgaatgctgagttacagtacagtatcatcagcagcatcatt
gtcacatctagggtctcccctcgaggtctcttttccatcgacaaaacaacgggtaacata
actctgcaggagaaaatagtattggctgatgtgggactgcataggctggtggtcaaggtc
aaagatttaggccagcctgagtctttacatgctattgcacttgtgcacttgtttgtcaat
gacactgtgtcaaattccacatttatccaagagcagctgcggaaaagtatggaaacacca
ttggatcgtaacataggggacaatgagataacgcctcaagccaatggatatgtgattgtt
gttatagcaattattgcagggaccatgactgttattttggtcatatttgtcactgccctg
gtgcgctgccgacaaacacctagacataaagtagttcagaaaggcaagcagagtggggag
tgggtgtcacccaaccaagaaaaccgtcaaatcaaaaagaagaagaagagaaagaagcgg
tctcctaaaagccttctcttgaacttagtgactatagatgagtcaaagcctgaagacccc
acacatgagcatgttaatggtactctggatcttccggtggagctagaggagcagaccatg
ggaaagtacaattgggcgaccacacctacgaccttcaaacctgacagcccagatttagcc
aagcattataaatctgcatcccctcagcccacatttcaaatcaaaccagaaactccagtg
gcccctaagaagcaccatgtgatccaggagctccccttggacaatacgtttgtggtgggc
tgtgactcactctccaagtgttcatcaactagttctgacccatacagtgtctcagagtgc
ggctgtcaggggggattcaagacttcagggcaaatcgccacccggcagaacccgggccag
acaccagaaaagtcttttaactctacatcacctatttgtaagtcgcaagacctcaatcca
gtagagcacctctgggatgtggtggaacgggacgtatgcatcagggatatgcagccgaca
aatcagcagcagctgtgtgatgaggcctgtcaacttggaaagataacctctgtaaatctt
gactatctggtgagaaatatcagaaatcattcttcaaactgggatttttcaaacaactat
ctactgcagacccagcgccgtgtgaccttccatcttccagatggatcccaggaaagttgc
agtgacagcgggctgggggacgcggatcccagcagcacagccagcgccacccagcctctc
cccttgagcttcccccgagaagaatactatgagcaaacgtcaccaaacagtcgcaccgag
ggagacggaaattcagaccctgaatctaccattgaggttaatttgaagaaagctctcgct
gaggcttcagagacctgcacccaggagtgtctaatactgggccactctgacagctgctgg
atgcccccaaccctggcccacttccaaagccctggaaccaacagccccacctctacccct
actaccaccatcagcgccgcagcactcccatcctttggctttcagggagtaaaagccaac
ataggcggcatgggggtcatggatggccgccacactctgggcaggtctgtgcccaaaaga
gatgaactagacaaagggttcagcaggccacagttctacaacaccctagacagacactgc
agcagtaaaaaggaggacccagtcaaggtcattccactggcaagcttctcctctcctggg
cagcacactcctactggtggcagcagttctttcttaaatgagcaccagctgtaa
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integrated database retrieval system
