Cyprinodon tularosa (White Sands pupfish): 119788354
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Entry
119788354 CDS
T07496
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119788354 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctul03019
]
119788354 (hbs1l)
Messenger RNA biogenesis [BR:
ctul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119788354 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
119788354
NCBI-ProteinID:
XP_038148569
LinkDB
All DBs
Position
Unknown
AA seq
702 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDMYGQSVEDDYCISPATANQFIYSRRELQAPKEEPLEEEEC
EDEDVPMSPCVDLNIDPLDQAKLFSCLDHMREVLGDAVPDSVLTQAAMKYGFDPQKALDA
VLCEDTKTAPDTRSAAEDLPAVGRVVQERMPLPQRNKQDAVPEKAKTRDAAFDKLDCEVL
PKVARMTVSGKKQTMGFDVPSSGENGVISSPARRADGPESTKAVPVSEAGSKRPDTPSKG
TTGEEVSTSATPGRSAGKARQAINIKAELERRQGGKPLLNLVVIGHVDAGKSTLMGHLLY
LLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETKSKVVTL
MDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLA
VAVNKMDQVNWQQERFKEISSKLGQFLKQAGFKESDVYFVPTSGLSGENLTTRSTVSELT
SWYTGLSLLEQIDAFKAPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDKILA
VPPNETCTVKGITLHDEALDWAVAGDHVSLTVTGIDIIKINVGCVFCDVKEPIRVCTRFR
ARILLFNIEVPITKGFPVLLHYQTVSEPATIKKLISVLHKSSGEILKKKPKCLSKGMNAI
VEIQTQRPVSLELYKDYKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccatagaaatgttcgaggttacaactacgacgaagatttcgaggatgatgac
atgtatggtcagtctgtggaggatgactactgtatttcccctgcaacagcaaatcagttc
atctactcacgccgagagcttcaagcaccaaaggaggagcctttagaggaggaagaatgt
gaagatgaggatgttccaatgtccccttgtgttgacctcaacattgaccctcttgatcaa
gcaaagctgttctcctgtctggaccacatgcgggaagtactgggagatgcagtgccagac
tccgtcctgacccaggctgccatgaagtatggatttgacccacagaaggcactggacgct
gtgctgtgtgaagacactaaaacagccccggataccagaagtgcagctgaagatctgccg
gcagttggccgagttgttcaggaaaggatgcctcttccacagagaaataaacaagacgcc
gtgcctgagaaagctaaaaccagagatgcggctttcgataaactggactgtgaagttctt
cccaaagtggcccgaatgaccgtctctgggaagaagcagactatgggctttgatgtcccc
agctcaggggagaacggcgttatctccagccctgcacggcgggctgacggccctgaaagc
accaaggcagttccggtctctgaggccgggtccaaacgtcctgatacgccatccaaagga
acaactggagaagaagtctctacctctgctacaccggggcgctccgccggaaaggcacga
caggcgataaacatcaaggcagagctggagagaagacaaggggggaaacctctgttaaat
ttagtagttataggacatgtggatgcaggtaagagcacattgatgggccacttgctctat
ctgctgggcaacgtcaacaagcgaaccatgcacaagtacgaacaggagtcaaagaaagct
ggaaaggcttcctttgcctacgcctgggttctggatgaaactggcgaggagagggacaga
ggggtgactatggatgtgggcatgacaaagtttgagacaaagtctaaggtggtgactcta
atggatgcaccgggtcacaaggacttcattcccaacatgatcacaggcgctgcacaggct
gatgtagctgtgctggtggtggacgccagcagaggggagtttgaagctggctttgaagca
ggggggcagaccagagagcatgctctgctggtgcgttcgctgggtgtcactcagctagcc
gttgcagtcaacaagatggaccaggtaaactggcagcaggagcgtttcaaagaaatcagt
tcaaaactcggtcaatttctaaaacaggcaggattcaaggagtcagacgtttacttcgtc
cccaccagcggcctgtcaggagaaaatctcaccactagaagtacagtgtcagagctcacc
tcttggtacacggggctcagcctgttggaacaaattgatgcattcaaagcccctcagagg
tctatagacaaacctttcagactgtgcgtctctgatgtgttcaaagaccagggctcaggc
ttctgcgttacagggaagattgaggctggttacattcagacaggagacaaaatactggca
gtgcctcccaatgaaacctgtacagttaaaggaatcactctacatgacgaggctctggac
tgggctgtagctggagaccatgtcagcctcacagtcactggaatcgacatcatcaaaatt
aatgtcggctgtgtgttctgtgatgttaaagagccaatccgcgtctgtactcgattcaga
gccagaatcctgctcttcaatatcgaggttccgatcacaaaaggcttcccagtgctgctg
cattaccagacagtcagtgagccggccaccattaagaaactaatcagcgttctacacaag
agcagtggtgaaatcctcaaaaagaaaccaaagtgtttgagtaaaggtatgaatgcgatt
gtggagattcagacccagaggccggtgtcattagagctctataaggactacaaagaactg
ggccgcttcatgctgagatatgttggttccaccattgctgcaggtgttgtcacagagatc
aaagagtga
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