Cyprinodon tularosa (White Sands pupfish): 119788726
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Entry
119788726 CDS
T07496
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04510
Focal adhesion
ctul04512
ECM-receptor interaction
ctul04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119788726 (col2a1b)
04518 Integrin signaling
119788726 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119788726 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ctul00536
]
119788726 (col2a1b)
Glycosaminoglycan binding proteins [BR:
ctul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119788726 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
119788726
NCBI-ProteinID:
XP_038149294
LinkDB
All DBs
Position
Unknown
AA seq
1489 aa
AA seq
DB search
MLSFMDSRTLLLLVASQVFLLAVVRCQREDNQEEDFICSQDGQSYNDKDIWKPEPCRICV
CDKGMVLCDDIVCEELKDCPKPEIPFGECCPICAADQPSSFGAKGQKGEPGDITDVVGPR
GPAGPMGPPGEQGPRGSRGEKGEKGSPGPRGRDGEPGIPGNPGPPGPPGPNGPPGLGGNF
AAQMAGGFDEKAGGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGSPGEAGEPGQAGP
MGPRGPSGPPGKPGDDGEPGKPGKPGDRGPTGPQGARGFPGTPGLPGIKGHRGYPGLDGA
KGETGAVGAKGEAGAPGESGSPGPMGPRGLPGERGRPGSTGAAGARGNDGLPGPAGPPGP
VGPSGAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIPGA
KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPVGP
QGAPGPQGEEGRRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGQPGT
SGAKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQ
PGVMGFPGPKGATGEPGKSGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGQ
PGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGAQGLQGP
RGLPGTPGTDGPKGAIGPAGGPGAQGPPGLQGMPGERGAAGIPGPKGDRGDVGEKGPEGA
SGKDGARGLTGPIGPPGPAGPNGEKGETGPAGPSGPAGVRGAPGDRGETGPPGPAGFAGA
PGADGQPGIKGEQGEAGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGATGF
PGAAGRVGPPGPNGNPGPPGPAGSPGKDGPKGVRGDGGPPGRQGDPGLRGPAGAPGEKGD
AGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGGPGDRGP
PGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSPGIKGDRGNTGPAGAPGAPGAPGAPGP
VGPTGKQGNRGESGAQGPSGPPGPAGARGMPGPQGPRGDKGEGGEAGERGQKGHRGFTGL
QGLPGPPGQPGDQGATGPAGPSGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRTGDSGP
AGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQAAGNLRQHDAEVDAT
LKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPNWKSGEYWIDPNQGCTVDAIKVFCNME
TGESCVNPRPAKIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAPNTAAIQMTFL
RLLSTEASQNITYHCKNSVAYLDASTSNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDSC
TRHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVDIGAVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgttgagctttatggattccaggactttactgcttcttgtagcatcccaagttttctta
ttagcagtggtgagatgtcagcgggaagataaccaagaggaggattttatctgtagtcaa
gatggacagagttataacgacaaggacatatggaaaccagagccttgtcgcatctgtgtg
tgtgacaagggaatggtcctatgtgatgatattgtctgcgaggagctaaaagactgcccc
aaacctgaaatcccattcggagagtgttgccccatctgcgctgctgaccagccttcatct
tttggagctaagggtcaaaaaggtgaacctggagacattactgatgttgtaggaccaaga
ggaccggctggcccaatgggcccacctggagagcagggaccccgcggatcgagaggagaa
aaaggagaaaagggaagtcctggtcctcgtggcagagacggtgaacctggcatccctgga
aatccaggacccccaggacctccaggacccaatggaccccctggccttggcggaaacttt
gctgctcagatggcgggtggttttgatgagaaggccggcggtggagcacagatgggtgtg
atgcaaggaccaatgggccccatgggacccagaggaccacctggccccacaggagcacct
ggcccacagggtttccaaggcagcccaggagaggctggagagcccggccaagctggcccc
atgggtccccgtggcccctctggacctcctgggaaacctggagatgatggggaaccaggg
aaaccagggaaaccaggagaccgtggacccactggacctcaaggagctcgcggtttccca
ggaactcctggtctgcccggcatcaagggacacagaggttatcctggtcttgatggtgca
aagggagagactggtgctgttggtgctaagggtgaggccggtgcccccggtgagagtggc
tcacctggacccatgggaccacgtggtttgcctggggagagaggacgtcccggatccacc
ggagctgctggtgcacgaggaaatgatggcttgcctggtcctgctggtcctccaggccct
gttggtccatctggggctccgggcttccctggatctcctggtgcaaagggtgaagctggt
cctactggtgcacgtggtcccgagggagctcaaggaccccgtggagagtcgggcactcct
ggatcacctggaccctctggtgcctctggtaaccctggcactgatggtattcctggagct
aaaggctcagcaggtgctccaggtattgcaggcgctcctggtttccccggacctcgtggg
cctcctggacctcagggagcaactggacctcttgggccaaaaggaacatctggagatcca
ggtataccaggattcaagggggaggctggaccaaaaggagaaattggaccagtaggccct
cagggagcccctggcccacagggagaagaaggcaggagaggacccagaggtgagcctggt
gctgctggacctctaggacctccaggagaaagaggagcccctggtaatcgtggtttcccc
ggtcaggatggtctggctggtcccaagggagccccaggtgagcgtggacaaccagggacc
agcggtgccaagggagccactggtgaccccggccgtcctggtgagccagggcttcctggt
gcaaggggtttgactggtcgtcctggtgatgctggaccccagggtaaagtcggaccttct
ggagctcctggtgaggatggacgtccaggaccccctggccctcagggagccagaggacag
cctggtgttatgggattccctggaccaaagggagcaactggtgaacctggaaaatctggt
gagaaaggactggctggagctcctggtcttagaggtctgcctggaaaggatggagaaacg
ggtgcagctggaccccctggccctgctggccctgctggggagagaggagagcaaggacag
cccggtccctccggtttccagggtctccctggaccccctggccctcctggtgaaggaggc
aaacctggagaccagggcgttccaggagaggctggagctgctggtgctaccggacccaga
ggagagcgtggttttcctggagagagaggagctgctggtgcccagggtttgcagggtccc
agaggcctacctggaactcctggaactgatggacccaagggagccattggacctgctggt
ggtccaggagctcagggaccacccggcctccagggaatgccaggagagagaggtgctgca
ggcattcctggacccaaaggagacagaggtgatgttggagagaaagggcctgaaggtgct
tccggcaaagatggtgccagaggtcttactggtccaattggtcctcctggtccagctggt
ccaaatggtgagaagggtgaaactggacctgctggaccatccgggcctgctggtgttcgt
ggtgcacctggtgacaggggagagactggacctcctgggcctgctgggtttgctggagct
cctggggctgatggtcagcctggaattaagggagagcaaggagaagctggacagaaagga
gatgctggtgcacctggaccacaaggaccatccggtgcccctggacccgcaggtcctact
ggagtttctggaccaaaaggtgctcgtggtgctcagggtccccctggtgccaccggtttc
cctggagctgctgggcgagttggacctcctggccccaatggcaaccctggacccccaggt
cctgctggctctcctggtaaagatggaccaaaaggtgtgagaggagatggtggacctcca
ggcagacagggtgatcctggactacggggacctgcaggagctccaggagagaagggagac
gctggagaggatggaccccctggtccactgggtccctcaggtccgcagggattggccggt
cagcgtggtattgttggtctgcctgggcagagaggagaaagaggtttccctggtctcccc
ggaccttctggtgagcctggaaagcagggagcttctggtggtcctggagaccgtggaccc
cctggacccgtcggaccacctgggcttactggacctgctggagagcctggcagagagggc
aaccctggatctgatggacctcctggtagagatggttctcctggaattaagggtgaccgt
ggcaacactggtcctgctggcgcacctggtgcaccaggtgctcctggtgctcccgggcca
gtcggtcccactgggaaacagggaaacagaggggagtctggtgctcaaggaccatctgga
cctccaggaccagctggtgccagaggaatgcctggaccgcaaggaccacgtggcgataag
ggtgaaggtggagaggccggtgagcgaggacagaagggacacagaggtttcactggtctg
cagggtcttcctggaccacctggtcagcctggagaccagggtgccactggacctgctggg
ccatctgggcaaagaggaccacctggacctgttggtcctgctggaaaagatggttcaaat
ggcttaccaggacccatcggaccccctggacctcgtggtcgcactggagactcgggtcct
gctggtccccctggaaaccccggaccccctggtcctcctggtccccctggtcctggcatt
gacatgtctgcctttgctggtctgggtcaaacagaaaagtccccagaccctctcaggtac
atgagggctgaccaggccgcgggcaatctccgtcaacacgatgcagaggtcgacgccact
ctcaagtctctcaacaaccagattgagaacattcgcagcccagaggggtccaagaagaac
cctgctcgcacctgcagagatctaaagctgtgccaccctaactggaagagcggtgagtat
tggattgatcccaatcagggctgcactgttgatgcaatcaaggtcttctgcaatatggag
accggggagtcctgtgtgaatcctaggcctgctaagatcccacgcaagaactggtggtcc
agcaagagcaaagatcgcaaacatgtctggttcggagagacaatgaatggagggttccat
ttcagttatggtgatgacagcctggcccctaacaccgccgccattcagatgactttcctg
aggttgctttccaccgaggcttcccaaaacatcacttaccactgcaagaacagcgtggca
tacctggatgcctcaacaagcaacctgaagaaggccgtgctgctccaaggctccaacgat
gtggaaatcagagccgagggcaacagccgcttcacctacagcgtcatggaggacagttgc
acgagacacacaggacaatggggtaagacagtgattgaatacaggtcgcagaagacctct
cgtctgcctatcgtagacattgctcccatggatatcggtggagcagaccaggagtttgga
gttgatatcggggcagtttgcttcttgtaa
DBGET
integrated database retrieval system
