Cyprinodon tularosa (White Sands pupfish): 119789400
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Entry
119789400 CDS
T07496
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119789400 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ctul03000
]
119789400 (arid1b)
03021 Transcription machinery [BR:
ctul03021
]
119789400 (arid1b)
03036 Chromosome and associated proteins [BR:
ctul03036
]
119789400 (arid1b)
Transcription factors [BR:
ctul03000
]
Eukaryotic type
Helix-turn-helix
ARID
119789400 (arid1b)
Transcription machinery [BR:
ctul03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119789400 (arid1b)
Chromosome and associated proteins [BR:
ctul03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
119789400 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
119789400
NCBI-ProteinID:
XP_038150196
LinkDB
All DBs
Position
Unknown
AA seq
1901 aa
AA seq
DB search
MDASLGPDSSSNNNPPSTGTSSRFNHYYGNGRGGPCFDQHGGQQSPGTGVTAAANTVHGT
MDQVHNSHEGYSNNSPYNHYPNYRGGYGSGGYGGMMSPSRQGNSLMGPTAANPAKAVMTA
ASSPAGGGGGFQRFPGQGQQHPSGATPTLNQLLTSPSPMMRGYGGGYSDYSNPAPQQHQA
AAEETGSQYGSAGAHGWGGQQRSHQGNNGASGGRSQVPPMDPMAMKRSQLYGMSNSPYSQ
QQGAPYPGQPYSSPSSHRYPMGMSGRGQMGMGGMHYPQQQMGSQYGSQQQNLSSYSQPGQ
PPYFSPPQQQPAAPSQPPYMQPCPLPSQEVPQEAYGGRGKSAAMTPGKPNHEDMSGSQQE
RPSSLPDLSRSIDDLLTGTEAPVSSGASGSGSTHGDQGTPGARSPFSPHVSPRLPPPART
GPSPAPSLSPAGSRSGPLSPTSTSGPGSQVAPQVAPGPGSDAGSHPSQSAMPSDRGFPPS
MQRSTQGSHFGPSPMSPHPAPVGPMHNSPYHQSSHSYGPPGNYPRPPHYGGTPAAGYSGP
TPGPNVGLNTTGPMHGQGPSTPSGRGPGPGAGGRPYTAGPGTMAPTSPNMPQAAGQGMGP
LGPNASCKPPEMGPNSGPGANSSHSRQGGYSAMSPMGGGPYSLQPGSNSGRMTPQGPPYT
AAGLGVMAADGMGPHGELKQRMELSREAVGPAAEQLKLKQDGYSSQCGPHPPTPYPMSPG
SASVSSCVGEDGDGISCPAWLRTPPSPKPNAATMTTEKITRLYEMGSEPERRLWVDRYLS
FMEERGTPVPNLPAVGKKPLDLCRLYLAVREVGGLAMVNKNKKWRELSSLLNVGTSSSSA
SSLKKQYIQYLFAYECKMERGEEPPPEGAGDAKKPASLQAKAQPPSPANSGSLQGPNTPQ
SSSSSLTEAPVDLKPPTRSSTPHNQMGPQSGNRTMGGVSVQDPFSEVNDPAFHNKRGLGP
GGGPYQQGGGPTEPPMRMPYDAIKDPYGGSRKGPIPGEAFGQNQMSSGAMQDMYLRGPSS
APLTGMGPRPQFPYGPGYDRRLDHVMASEGGILPPAGQNSMGPSSNEASMYPPNRYAPER
HEGFGQQYHGVAYSSHQPLYPQQQGYKRPMEGMFPAAKRHEGEAFGVQQYGSQQPDPYGP
FGSGAGGYSAPERRPVPGQYQYPYSRDRQGPPQHGMMGSGPTAGPGGPGEGPQPNLWPQR
TDLGYTYSRQGQGPPFTSMNRGDDQEGRAPQDGQWPPGPLTQRQPTFPPHSSSSSMPPLP
SRQPPSSFQATPTIPNHVARSQSPSSFPRPPVGSLSPNSGPYMSSAKKPGFPGAPAGPPA
SQGLPLVYREVSFPPGSVEATPPKVKPRRRLTAKDTGTPEAWRVMMSLKSGLLAESTWAL
DTINILLYDDSTVGSFNLTQLPGFLELVVEFYRRCLIQMFGILQEYEVGPHAGPPTDDME
TSEDEDVKPVPQREVTEQTESRPPQSSKYDKRPIKVEETGESWEEAEQRWNAAARPDGFS
SGLLHWKAGGGDSTAHIQTHFEPRTDDSTPTELEREDGGGPPEEEQPQKEGGSPSEVKGQ
GSAPAEPQSPINLLEDEPRRWYEAPLSTAESWQDSLAKRCVCVSNIVRNLSFVPGNDAVL
SRHPGLVLILGRLVLLHHRHPRRKRAPPTYQREEEQGLACSRDEWWWDCLAALRENTLVT
LANMSGQLDLSQYPEDIILPILDGLLHWMVCPSAEAQDPFSSAGGAPSLSPQRLVLECLC
KLSIKDCNVDLLLATPPFSRQQKLFSTLVRLVGERRSQVCREMAVAVLSYLAQGDATAAR
AVALQKGSVETLIGFLEDSLAVAQYQQNPHSLAHAAAPSEPPSINMMCRAAKALLAVASV
EENQAEFVLYESRLLDISLSSALNPSVAAIMCEVLFKLSRS
NT seq
5706 nt
NT seq
+upstream
nt +downstream
nt
atggatgccagcctgggaccagacagcagcagcaacaacaaccctccttctaccgggacc
agctcccggtttaatcattattatgggaatggaagaggagggccttgctttgatcaacat
ggcggacaacaaagcccagggactggggtaacagcagcggcaaacacggtacacggcacc
atggaccaggtccacaactcccatgaaggctacagcaacaacagcccgtataaccactat
ccgaactaccgagggggctacgggagcggcggctacggaggcatgatgagcccctcacgg
caggggaacagcctgatgggcccgaccgctgctaaccctgccaaggcggtcatgactgcc
gccagttccccggctggaggcggaggaggcttccagcggttccccggacagggccagcag
cacccttcgggggctacgccgactttaaaccagttattgacgtctccgagcccgatgatg
cgcggctacggaggcggatattcagattacagtaatcccgctccacagcagcaccaggcg
gccgcggaagagacgggctcccagtacggctcagcgggagctcacggctgggggggacag
cagaggagtcaccaggggaacaacggagcgagcggtggccgatctcaggtgccgcccatg
gaccccatggcgatgaaacgctctcagctctatggaatgagcaacagcccgtactcccag
cagcagggggcgccctaccccggacaaccctacagctccccgtcttcccacagataccca
atgggaatgtctggcaggggccagatgggaatgggagggatgcattaccctcagcagcag
atgggctctcagtacggctcgcagcagcagaacctgagcagctacagccaaccgggtcag
ccgccgtacttcagccccccccagcagcagccggctgcccccagccagcctccctacatg
cagccctgcccgctgccctcacaggaggtccctcaggaggcgtacggggggcggggcaag
tctgcagcgatgactcctgggaaaccaaaccacgaggacatgagtgggagccagcaggag
aggccgtccagcctgccggacctttcccgctccatcgacgacctgctcaccggcacggag
gccccggtgagctcaggggcctcggggtctggcagcactcacggagaccaagggacccca
ggggcccgctcaccgttctccccccacgtctcgccgcgcctccccccgccagctcgaact
gggccttcgcccgccccatcgctgtcccccgcgggatcccgttcagggcccctgtccccc
accagcaccagcggcccaggctctcaggtggccccccaggtggcccccggtcctggatca
gatgctggctcccatccctcccagtcagccatgccttcagacagaggtttcccaccctcc
atgcagcgcagcacccagggctctcattttggaccctcacccatgtccccccacccggca
ccagtgggccccatgcacaacagcccctaccaccagagcagccactcctacggcccccca
ggtaactacccccggcccccccactacggagggacgcctgctgccggctacagcggtcca
accccggggcccaacgtgggcctgaacaccacgggccccatgcacggtcaaggcccctca
accccatcaggccgtggccccgggcctggagccgggggccgtccctacactgcaggaccg
ggcaccatggcccccacctccccaaacatgccccaagctgctggccaaggcatggggccc
ttagggccaaatgccagctgtaagccgccggagatgggccccaactctggaccaggtgcc
aactcctcccacagcaggcagggcggctactcagcaatgagcccgatgggaggagggcct
tacagcctgcagccgggcagcaactccggcaggatgaccccacagggacccccttacacc
gccgcaggcttaggggtgatggctgctgacgggatgggtcctcatggagaactaaagcag
cggatggagctcagcagggaggccgtcggtcctgcagccgaacagctcaaactgaagcag
gatggctacagctcccagtgcgggccgcacccccccaccccctatcccatgtcccccggc
tcggctagcgtgtcctcctgtgtgggggaggacggtgatggcatcagctgccccgcctgg
ctcaggactcctcccagcccgaagcccaacgctgccaccatgaccacggagaagatcacc
aggctctatgagatgggctcagagccggagaggaggctgtgggtggaccgctacctgtcc
ttcatggaggagagagggacgccggtcccaaaccttccggcggtcgggaagaagcctctg
gacctgtgccgcctttacctggctgtgcgagaggtcggaggactggccatggtgaacaag
aacaagaagtggagagagctgtcgtccctgctgaacgtcgggacgtccagcagctcggcc
agctccctgaagaagcagtacatccagtacttgttcgcctacgagtgcaagatggagaga
ggagaggagcctccgcccgagggcgccggcgacgccaagaagcccgcttccctgcaggcc
aaggctcagccgccttctccagcaaattccggctccctgcagggccccaacacaccgcag
tccagcagcagctctctcactgaagctcctgtagacctgaagcccccgacccgctcctcc
accccccataaccagatgggtccccagtctggaaacaggaccatgggaggcgtcagcgtc
caggacccgttctctgaagtcaacgatccagcctttcacaataaacgaggcctggggccc
ggtggtggcccctaccagcagggagggggtccaacagaacctccaatgcggatgccctat
gatgccatcaaagacccgtatggaggctctaggaagggtccaattcctggcgaggccttc
ggtcagaatcagatgtccagtggtgcaatgcaggacatgtacctccgtggaccatcctct
gcccccttaacagggatggggcctagaccgcagttcccctacggccccggctacgatcgg
agactggaccatgtgatggcatcagagggaggaatactgccccctgcaggtcagaacagc
atgggcccatcttcaaatgaagctagcatgtatccccccaacagatacgcccccgagagg
cacgaaggcttcggtcagcagtatcacggtgtggcctacagttcccatcagcccctctac
cctcagcagcagggctacaagcgccccatggaggggatgttccccgccgctaagcgtcat
gagggcgaggccttcggcgtgcagcagtacggctctcagcagccggacccctatggcccc
tttggatcaggagccgggggctactctgcccccgaacgtcggcccgtccccggccagtac
cagtacccttacagccgagacaggcaaggccccccgcagcatggaatgatgggttcgggc
cccacagcggggcctgggggccctggagaagggccacagcccaacctttggccccagagg
acagacctgggttacacatacagccggcagggccaggggccccccttcaccagcatgaac
agaggggacgaccaggagggcagggccccccaggacggccagtggccccccggtcccctc
acccagcgccagcctaccttccccccccactcctcctcttcctccatgccccccctcccc
tcccggcagcccccctcgtccttccaggccacgcccaccatccctaaccacgtggctcgg
tctcagagcccctcgtctttcccccggcccccagtgggctccctgtcccccaacagcggc
ccctacatgtcctccgctaagaaaccagggtttcctggggccccggccgggcccccggcc
tctcagggcctccccctggtctacagagaggtcagcttcccccccgggtcggtggaggcc
acaccccccaaagtgaaaccacggagacggctcacagccaaggacacaggaaccccggag
gcgtggcgagtgatgatgtcactgaagtcgggcctgttggcagagagcacctgggcgctg
gacaccatcaacatcctgctgtacgacgacagcaccgtgggctccttcaacctgacgcag
ctgccaggattcctggagctcgtcgtggagttttatcgccgctgcctcatccagatgttc
gggatcctccaggagtacgaggtggggccccatgcagggccccccaccgacgacatggag
acatctgaggacgaggacgtcaaacccgtcccccagcgggaggtcacggagcagacggag
tcccgccctcctcagagcagcaagtatgacaagcggccgatcaaggtggaggagacgggg
gagagctgggaggaggcggagcagcgctggaacgcggcggctcgacccgacggcttcagc
agcggcctgctgcactggaaggccggaggcggagactccacggctcacatccagacgcac
tttgaacctcgaaccgacgactccacccccacagagctggagagggaggatggagggggc
cccccagaggaggaacagccccagaaagaaggaggctcaccctccgaggtcaaaggtcag
ggctcagcgccggctgagcctcagagtcccatcaacctcctggaggacgagccgcgccgc
tggtacgaggcgccgctgtccacggcggaatcctggcaggactctctggccaaacgctgc
gtctgcgtctccaacatcgtccgtaacctctccttcgtccccggcaacgacgccgtgctg
tcgcgccacccgggcctggtgctgatcctgggccggctggtgctgctgcaccaccgtcac
ccccggaggaaaagggcgccccctacgtaccagcgggaggaggagcagggtctggcctgc
agccgggacgagtggtggtgggactgcctggcggcgctgagggagaacacgctggtgacg
ttagctaacatgtcgggccagctggacctgtcccagtacccggaggacatcatcctgccc
atcctggacgggctgctgcactggatggtgtgtccgtccgccgaggctcaggacccgttc
tcctcggcgggtggcgccccgtcgctctcgcctcagaggctcgtcctggaatgtctttgc
aagctgagcatcaaggactgcaacgtggacctgctgctggccacgccccccttcagccgc
cagcagaaactcttctccacgctggtgcgactggtcggtgagaggaggagtcaggtgtgc
cgggagatggcggtggcggtgctgtcctacctggctcagggcgacgccacggcggcgcgg
gccgtcgccctgcagaagggcagcgtggaaaccctgatcggcttcctggaggacagcctg
gccgtggctcagtaccagcagaacccgcacagcctggcgcacgccgccgcaccgtcagag
ccgcccagcatcaacatgatgtgccgcgccgcaaaggcgctcctggccgtggcgagcgtg
gaggagaaccaggcggagtttgttttgtacgagagtcggctcctggacatctcgctgtca
tcggcgctcaacccgtcggtggcggccatcatgtgcgaagtactgttcaaactcagccgc
tcgtga
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integrated database retrieval system
