Cyprinodon tularosa (White Sands pupfish): 119790567
Help
Entry
119790567 CDS
T07496
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ctul03016
]
119790567 (rtcb)
Enzymes [BR:
ctul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
119790567 (rtcb)
Transfer RNA biogenesis [BR:
ctul03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
119790567 (rtcb)
Prokaryotic type
tRNA splicing ligases
119790567 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
ACP_syn_III_C
Motif
Other DBs
NCBI-GeneID:
119790567
NCBI-ProteinID:
XP_038152077
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLEKTGRTSWRIKKGFVPNMQVEGVFYVNESLEKLMFEELRNACRGGGIG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPNAVVSPGGVGFDI
NCGVRLLRTNLDERDVQPVKEQLAQALFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFGTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgaaactacaacgatgagctgcagtttctggagaaaacgggcagaaccagctgg
cggatcaaaaagggttttgttcccaacatgcaggttgaaggagttttctacgtgaacgaa
tctctggagaagttgatgtttgaggagctcaggaacgcctgccgaggaggaggaattgga
gggttcctgccggccatgaagcagatcgggaacgttgcagctctgcctggcatcgttcat
aggtccatcggactcccagatgtccactccggctacggattcgccatcggaaacatggct
gcctttgacatgaacgatccgaacgccgtggtttctccaggcggggtcggctttgacata
aactgtggcgtccgtctcctgagaaccaacctggatgagcgggacgtccagccggtgaag
gagcagctggcccaggccctgttcgaccacatccctgtcggagtcggctccaaaggagtc
atcccaatgggagccaaggatctagaggaggctctggagatgggggtggactggtcccta
agggagggctacgcctgggccgaggacaaggagcactgcgaggaatacggccggatgctg
caggccgatcccaacaaggtgtcctccaaggccaagaagagaggcctgccacagctggga
acgctgggagctggaaaccactacgctgagatccaggtggtggacgagatctacaacgag
tacgccgcaaagaagatgggcatcgaccacaagggccaggtgtgcgtgatgatccacagc
ggcagccggggcctcggacaccaggtcgccacagatgctctggttgccatggagaaggcc
atgaagcgtgataagatcacagtgaacgaccggcagctggcgtgcgctcggatcacttcg
caggaggggcaggactacctgaaggggatggccgccgcagggaactacgcctgggtcaac
cgctcctccatgaccttcctgacccgacaggccttctctaaagtcttcggcaccacacca
gacgacctggacatgcacgtcatctacgatgtctcccacaacatcgccaaggtggaggag
cacatggtggacgggaagcagaggacgctgctggtccaccgtaagggatccacacgggcg
ttcccccctcatcaccctctgatccccgtggactaccagctcacaggccagccggtgctg
atcggaggaacgatgggaacctgcagctacgtcctgacaggaaccgaacagggaatgacg
gaaaccttcggcactacgtgtcacggagcgggccgcgctctctctagagcaaaatcccgc
aggaatctggacttccaagacgtcctggacaaactagccgacatgggcatcgccatccgg
gtggcttctcccaaactggtcatggaggaggctccggaatcctacaagaacgtgacagat
gtggtgaacacgtgtcatgacgctggaatcagcaagaaggccatcaaactcaggcccatc
gccgtgattaaaggctga
DBGET
integrated database retrieval system
