Cyprinodon tularosa (White Sands pupfish): 119790645
Help
Entry
119790645 CDS
T07496
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6
KO
K10841
DNA excision repair protein ERCC-6
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
119790645 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ctul03036
]
119790645 (ercc6)
03400 DNA repair and recombination proteins [BR:
ctul03400
]
119790645 (ercc6)
Chromosome and associated proteins [BR:
ctul03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
119790645 (ercc6)
DNA repair and recombination proteins [BR:
ctul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
119790645 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
DegQ
Spt5-NGN
Motif
Other DBs
NCBI-GeneID:
119790645
NCBI-ProteinID:
XP_038152187
LinkDB
All DBs
Position
Unknown
AA seq
1440 aa
AA seq
DB search
MPAEDGDLQASSSISSPVSAALTPGRLEEDGSTKGPAVCAFPENSQGSEAAAAFPANTGP
GEGNSAGKRAGALLQINRQRIQVASASSGADELQGLGVAVYDQDVLEQGVLQQVDEAIHE
ANQAAAKAEAEKEYQSVLDDVRSVTASLKHINKIIEQLSPYAASSKDISRKIESVKRQKE
NKEKQLKKVKAKQKRLQAILGGEDVQRVEAELLAEDDGEEEAGPSTLGSMLMPAQETEWE
ELIRKGHMTPFGTRIPQKEVKKEPRKLMLAENSAFDQYLADQAKLATERKKVPLLKKKKS
SALSLYEGTKGKTGKTVSSSKDKKLKKRMRKLQINALRTQPKAQPKPEPKLPKSRRKRYT
EGEQTDSEGSEYLPSDEGLDLDQEERDAMEEGFGDDNDNDDEYELKPYKKKAVGAGRKRM
KKNDSEDDYSPESSDDDSDNRSKSQKHKDDGDVEYYRQRIRRWKRQRLREREAKRDRGEE
LTDDSDAEFDEGFKVPGFLWKKLYKYQQTGVRWMWELHCQQAGGILGDEMGLGKTIQVIS
FLAGLSYSKLRTRGSNYRYVGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAVLHETGSFT
SKKEKLIPEIAACHGILITSYSAVRNLQDVLQRYDWHYVILDEGHKIRNPNAGVTVACKQ
FRTPHRFILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQV
QTAFKCACVLRDTINPYLLRRMKDDVKANLSLPDKNEQVLFCRLTEEQRQVYQSFLDSKE
VYQILNGDMQVFPGLIALRKICNHPDLFSGGPRILKGIPEDQLTEEEHFGFWKRSGKLMV
VESLLRLWFKQSHRVLLFTQSRQMLDILEVFVREKDYSYLKMDGTTAIASRQPLIARYNE
EKSIFIFLLTTKVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKQQVTIYRLL
TAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDIYELFTLADPDGSQGTETSAIFA
GTGSDVKVPKKPDRLKASACINKVSRDYKKSPGKQVENREIPALRDCSLSLSSGNLPGKS
NAPMDSRSTNQNLELNDSTNMPLVKDNNNSDPVEKANKSLSSASYQQHRDKGKHREKRKH
CDSADVDKRKHKKHKRSRDARFEGHRISHLVKKRTYKKEESEENSTEDQRKSDDYVLAKL
FRKSGIHSVMQHDTIMQSSNPDYVLVEAEANRVAKDALKALKISRQRCRLPFDRPPDPPA
KKRFGQKKNPLLLTRSAPSAPPPIKCKDAAIVKMPVSKKPSAGLHFSGEGADDDSNSAPL
SSASLLAKIKARNHISKLSSQGTAAEEDEEEEVNGLGASGTSTPPAPPTEHDELLVDLRN
FVAFQANVDGEATTQEVLEYFKPRLNQKQAPVFRELLRSICDFHRTSGQEGIWRLKEHFR
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcagaagatggagacctccaggcatcctcctccatctccagtccggttagtgct
gctctcaccccaggacgtttggaggaggatggatctacaaagggacctgctgtctgtgct
ttcccagagaacagtcagggttctgaggcagctgcagctttccctgccaacactggaccc
ggggagggtaacagtgctggcaagcgggcaggagcattgctgcagatcaaccgtcagcga
atccaagtggcatctgccagttctggagcagacgagctgcaaggtcttggtgtggctgtg
tatgatcaggatgttctcgagcaaggtgttctccagcaggtggatgaggcgatccatgag
gcaaatcaggctgctgccaaagcagaggctgagaaggagtaccaatcagtgctagatgat
gtcaggtctgttacagcatctttaaaacacatcaacaagattatcgagcagctatccccc
tatgctgcctctagcaaggatattagcaggaaaatagagtctgtaaaacggcagaaagaa
aataaggagaagcagcttaaaaaggtcaaagcaaaacagaagcgacttcaggccatactg
ggaggggaggacgttcagagagttgaggctgaactgctggcagaagatgatggagaggaa
gaagcgggaccgtccacactgggcagcatgctcatgccagcacaggaaaccgaatgggag
gaactcatccggaaaggccacatgacaccttttggtacccggataccacagaaggaggta
aagaaggagcctcggaaactgatgctggctgagaactctgcatttgaccagtacttggcg
gaccaggccaaattggctaccgaacggaagaaggtaccccttcttaagaagaagaaaagt
tctgcactcagcctttatgaagggaccaagggtaaaacaggaaaaacagtttcctcatcc
aaggataaaaaactgaagaagcgcatgcgaaagctgcaaataaatgctttgaggactcaa
cctaaggctcaacctaagcctgaaccaaagcttcctaagtcacggaggaagagatacaca
gagggagagcaaacagacagcgaggggtcagagtacctgcccagtgatgaaggactggat
ttggaccaggaggaaagggatgccatggaagaaggctttggggatgataatgataatgat
gatgagtatgaactaaaaccatacaagaaaaaggctgtgggggcaggaaggaagagaatg
aagaaaaacgacagtgaggacgactactcccctgagagttcagatgatgacagtgataac
aggagtaaatcccaaaaacataaagacgatggggatgtggagtactacaggcagcgaata
aggagatggaagcggcagcggcttcgagaacgagaggcgaaacgagaccgaggggaggaa
ctcacggacgacagcgatgccgaatttgatgaaggcttcaaagttcctggtttcctctgg
aaaaaactctacaagtaccagcagactggtgtgcggtggatgtgggaactccactgtcag
caggcaggaggcatcctgggagatgagatgggattgggcaaaaccatccaggtcatcagc
tttctggcaggactaagctacagtaaactgaggactagagggtccaactacagatacgtc
ggtttaggtccaacagtgattgtgtgcccagctacggtcatgcaccagtgggtgaaggag
ttccacacctggtggcctcctttcagagtggctgtcctgcatgaaactggctctttcacc
agcaaaaaggaaaagctgattccagaaatagcagcatgtcatgggatcctgatcacctcc
tattcagctgtgagaaatttacaagacgtgttacagcgctacgactggcactatgttata
ctggacgagggccacaagatcaggaatccaaatgccggcgtcactgtcgcctgcaaacag
tttcgtactcctcacaggttcatcctgtctggctcaccaatgcagaacaacttgaaggag
ctgtggtctctctttgacttcgtcttccctggcaaactagggacacttcctgtctttatg
gagcagttttctgtgccaataactatgggagggtacagcaatgcatcacctgtccaggtc
caaacggcgttcaaatgtgcctgtgtgctgagagatacaatcaatccttacctgctcaga
agaatgaaggatgacgtcaaggccaacctctccttacctgacaaaaacgaacaagtgctg
ttttgcagattaacagaggagcagcggcaagtttatcagagcttcttagattccaaagaa
gtgtatcaaatattgaatggtgacatgcaggtttttccaggtttgattgcactgcgcaag
atctgcaaccatccggaccttttctctggtgggccccggatcctgaagggaataccagag
gatcagctcacagaggaggaacactttggcttttggaaacgatcagggaagttgatggtg
gtggagtcgctgctgcgtctttggttcaaacagagtcaccgtgtcctgctcttcactcag
tccagacagatgctggacatcctggaggtttttgtaagggagaaggactactcctacctg
aaaatggacggcacgaccgcgatagcttccagacagccgctcattgctcgctacaacgag
gaaaaatccatttttatcttcctgctgaccactaaagttggtggtctgggagtcaatcta
actggagccaacagagttatcatatatgatccggactggaaccccagtacagacacacag
gctcgagagcgagcgtggaggataggtcaaaagcagcaagtaaccatctacaggctgctg
actgcagggaccattgaggaaaaaatctaccacaggcaaatcttcaagcagtttctcacc
aatcgcgttctgaaggatcccaaacaaagacggttcttcaagtctaatgacatctatgag
ctcttcactttggctgatcctgatggatctcaggggacagagaccagtgccatatttgca
ggcactggatctgatgtcaaagtacccaagaaacctgacaggttaaaggcatcggcctgc
ataaacaaagtcagccgtgattataaaaagtccccaggaaaacaggttgaaaacagggaa
atccctgccttaagagactgcagcttatccctatccagtgggaaccttccgggtaaatct
aacgctccaatggacagtcggagcacaaatcaaaatttagaattgaatgattcgacaaac
atgcctctggtaaaagataataacaactcggatccagttgagaaggcaaacaaaagcctg
agctcggctagctatcagcagcacagagacaaaggaaagcacagggaaaagagaaagcac
tgtgactccgccgatgtggacaaacgcaaacataaaaaacacaagcgctcccgggatgct
cggttcgaaggccaccgcatctcacatctggtgaagaaacgcacttacaaaaaagaagaa
agcgaagagaattcaacagaagaccagagaaaatcggatgactacgtcttggcaaagctc
ttcaggaaatctggtatacacagtgtgatgcaacatgacaccatcatgcagtcttccaac
cctgactatgttcttgtggaagctgaagccaacagggtggccaaagatgccctgaaagcg
ctcaagatttctcggcagcgttgcaggctgccttttgatagacctccagatccacctgcg
aagaaacgttttggacagaagaagaatcctcttttacttacgcgttctgctccatctgca
ccccctcccattaaatgcaaggatgccgctatcgtgaagatgcctgtttcaaagaaacca
agtgcaggacttcattttagtggggaaggggcagatgacgattcaaactcagcgccactg
tcgtccgcttccctgctggccaagatcaaagctcgaaaccatatctctaagctctcctct
cagggaacagcagcagaggaagatgaggaggaggaggtaaatggcctcggagcttcagga
acaagcacccctcctgctcctccaacagagcacgatgagctgttagtggatctgcgcaac
tttgtagccttccaggccaatgtggacggcgaggccaccacgcaggaagtcctggagtat
ttcaaaccaagactgaaccagaaacaggcccccgtcttcagagagctgctcaggagcatc
tgtgacttccatcggacctccggtcaggagggcatctggagactgaaggagcacttccgc
tga
DBGET
integrated database retrieval system
