Cyprinodon tularosa (White Sands pupfish): 119790727
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Entry
119790727 CDS
T07496
Symbol
col9a1b
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04510
Focal adhesion
ctul04512
ECM-receptor interaction
ctul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119790727 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119790727 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119790727 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ctul00535
]
119790727 (col9a1b)
Proteoglycans [BR:
ctul00535
]
Extracellular matrix (ECM) proteoglycans
Others
119790727 (col9a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119790727
NCBI-ProteinID:
XP_038152344
LinkDB
All DBs
Position
Unknown
AA seq
678 aa
AA seq
DB search
MAGTPGIRGPFLVVILQLVLLCSSQINRGPPGPPGPPGVPGIDGIAGERGVDGEDGFPGP
DGDAGKPGSLGLPGIPGKAGLTGPVGDPGPDGPLGQKGEPGNPGPRGATGVGPDGPPGPP
GPGGLLGELGKVGPPGAMGVRGPQGPRGPQGPRGATGMLGSSDLCPNSCPPGTPGHPGPP
GMKGHKGVKGEAGEPGKQGHKGEEGDQGGPGDVGSQGPTGPQGVRGAMGMMGPKGEMGAR
GPDGEPGPQGVAGGAGDRGQRGVMGEPGTKGEMGGQGPRGITGLPGPKGEAGLPGVDGRE
GIPGLPGAKGDIGKPGVPGEVGLQGLPGLPGTPGPKGLSGPKGDAGKPGFPGTLGSAGKQ
GERGEQGEVGPVGPIGEPGDAGESGPVGPAGKPGKRGPKGDPGLPGLPGPPGLPGVKGER
GERGEQGPKGEQGAQGDEGDPGERGEVGDAGEPGPKGEAGISGEPGNRGPEGPRGQPGID
GPPGSPGPRGMQGNRGPRGVRGSQGPAGKEPSDQHIRQVCMRVMQEQLAQLAASLRRPES
GAAGLPGKPGPPGPPGPPGNSGFPGQAGARGLPGLKGPLGPMGNKGPKGDMGDRGSRGPT
VRGAKGQPGPPGLPGEPGKPGYGQDGQDGQRGPPGVPGQPGVPGPPGPAGQNGYCDPSAC
NLQAGLQQSLDVKGPAGN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaccccaggcattagagggccttttcttgtggtgatcctgcaacttgtgctc
ctttgttcctcccaaataaatcgaggaccccctggcccacctggacccccaggagtccca
ggaattgatggcattgctggggaacgtggcgtagatggcgaggatggctttcctggccct
gatggggatgctggtaaacccggttctttaggattacctggaattcctggaaaagctggt
ttgactggccctgttggggatcctgggcctgatggtcccctaggacagaaaggtgaacct
gggaatcctggacctcgtggagctactggtgtggggcctgatggaccccctggaccacca
gggcctggtgggcttctgggtgaattgggaaaagttggacctcctggtgcaatgggtgtg
agagggccacaggggccccgtggaccacaagggcccagaggtgcaactggaatgcttggc
tcctctgacctgtgtccaaactcgtgtccacctggtactcctgggcatcctggcccacct
ggtatgaagggtcacaaaggtgtgaaaggggaggcaggggagcctggaaaacagggacac
aagggggaggaaggagaccagggaggtccaggagatgttgggtcccagggtccgacggga
ccccagggagtacgtggagccatgggaatgatgggccccaagggagagatgggagctcga
ggtccagatggagaaccaggtccacagggagtagcagggggagcaggggacagaggtcag
agaggagtaatgggcgagcctgggacaaaaggtgaaatggggggtcaaggaccacgaggg
ataacaggactcccaggtcccaaaggagaagctggattacctggtgttgacggacgtgag
ggtattcctgggttgccaggtgcaaagggagacattggcaagccaggcgttcctggagag
gttggacttcaggggcttcctggtttacctggaacacctggaccaaaaggcttgagtggc
cccaagggtgatgccgggaaacctggttttcctgggaccttgggatcggctggaaaacaa
ggtgaaaggggagaacaaggagaggtgggacctgtgggacccatcggtgagcctggagat
gctggagagtccggtcctgtaggcccagctggtaaaccaggcaaaagaggacccaaaggg
gatcctggtctccctggtctcccagggcctcccggccttccaggagttaagggagaaagg
ggtgaacgtggagaacaaggacccaaaggagaacaaggagctcaaggggatgagggagat
cctggagagagaggagaagttggtgatgctggagaacctggaccaaaaggagaggctggt
atttcaggtgaacctggcaataggggtcctgagggaccccgaggccagccgggtattgac
ggcccccctggctcaccgggaccacgaggaatgcagggaaacaggggtccacgtggggtc
agaggatctcagggacctgcgggtaaagagccaagcgatcagcacatcaggcaagtctgc
atgcgagttatgcaagagcagctggctcagttagctgccagtttacggaggccggagtct
ggcgctgcaggtttgccaggaaaaccgggtcctccagggcctcctgggcccccaggaaac
agtggctttccaggacaagctggagcaagagggcttccaggactgaaagggccactgggg
ccaatgggaaataaaggtcctaaaggtgatatgggagacagagggtcaagaggacccact
gttcgaggagctaaaggccaaccaggacctcctgggcttccaggagagccaggaaaacct
ggctatgggcaggatggtcaggacgggcagaggggacctcctggcgttccaggacagcct
ggtgtgcctggtcctcctggtccagctggccagaatggctattgcgacccatcagcctgc
aatctccaggcaggactccagcagtctctggatgtgaagggacctgcagggaactaa
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