Cyprinodon tularosa (White Sands pupfish): 119790874
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Entry
119790874 CDS
T07496
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119790874
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119790874
NCBI-ProteinID:
XP_038152539
LinkDB
All DBs
Position
Unknown
AA seq
1827 aa
AA seq
DB search
MDDLTRQMEISGEKVLTETVTSTSRLTSLPPKGTSGSNHRNMSSGAGGLGFEKNVLTQNS
SGTYFSSSSVGVTSNYSSSSGIYLGGDSSGGGEGGGSYIDGEGYGSGGGGGRGEGGSGST
YLVSSVSKVRSSSSGGARRAQTAGSSVGLSPGFRERKTISSRSGGYDGSSSANSSPEFPR
KDYGNYCSGATRGRSESRESEIRARLQSASPSAGRWAELEDVKKLLKGRSSSVSPTRSSS
ASITLPVPKKASAESKTLSVATQSVSTLFEPGVQSSGFNTIDVSGLYDGRLTSRQRDTGV
QTGQHAVTVKSCHCDAGVKSSQYDVSLGAAQYDTGLKSSQYVVCLSSAQYDTGVKSGGYD
MSLKSGRYDTGFKSSQYDTIGRSGQYDTLDSAFPTFSWSTTTLPSSATAVLAGNSGSYTY
QLGQVSTNNMSGGSPPISPAPAPSLSVYGFQNNLAPTSAAVLSTNAVNVSSSMGGYGVQK
NVSNGGAAISSGFSTATRSQTDDAYKRDYKYTVSEKGNVPARREGEMLILAKDSGKQFTT
SSSAQVGGGSLSGDSLKKEKLISSYIDTGTMKTDAGNSYYGSSGVLMKDKATYAEIHRDS
GVFGGGGFCCCSDSCCSWWKWLLGLLLLCLLLLGLLFGLIALAEDMRRLKKRVADLETKA
LFTGAESSRLIGGGGGTGSDKTFILGGGGGGTGSDKTVIFGGGAGGGGTGSDKTIIFGGG
AGGGGTGSDKTIIFGGGAGGGGTGSDKTIIFGGGAGGGGTGSDKTIIFGGGAGGGGTGSD
KTIVGEGGGGKISAAGAGTGSTGASFNGSASSDGNGFNTGTGVWNGVGTAVSGAYIDNVL
QTTIYRMLRSEMQSQTFKAFLATSVQGERGLPGPKGDPGLKGEAGVPGLPGVPGLIGHTG
PEGPKGQKGSQGEHGVDGPQGIRGRDGPPGPRGDMGPPGFGQKGDKGAQGEPGSVGPAGP
PGSKGPQGIQGLPGPPGQPGAQGFRGEAGLPGQKGDRGLAGFQGLKGEPGERGVRGLQGE
RGLPGLQGPAGEKGSKGSMGLSGQDGQKGSRGDQGPPGLRGAAGPPGDAGPAGPPGLQGA
PGIPGNPGQPGIKGETGQPGRIINAAGSTSIGIPGPPGPAGPPGPAGPPGLSGPIGPAGL
PGQPGPKGDRGEMGITARTSETVHLSTTGSKSFFFFALGRYTNGGNTHGPPGPPGPPGPP
GRPGDSRQGPPGPLGPPGEPGYGRPGPKGEKGDAGSSSSSGTYYRGPPGPPGTPGLKGET
GSPGPRGYTGEPGPPGRPGSSTGFAGNVIPGPTGPPGPPGVPGLPGVKGDTGAPGIPGSV
TVTSSRSGPPGPPGPPGPPGNFGDSTEMRQYISDYLSRYRLSGMSGPPGPPGPPGPPGPL
TGTIQDISTRVIAYLRRSDSGFSFGVQGPPGPPGPPGPGSGSLTVNALITMLQRDDVRRY
LSGPPGPQGPPGPPGASGELTGNYRMEEIAMYVFNIMNERGIARGPQGPPGPPGAPGIGG
SGINTAMIDYSELIRNADFRSWMASVMRQGPPGPPGRPGLPGPAGPQGPPGVSTSTVYGS
GSRGYSLEEIQRYLQGSGFRGLPGPPGPPGPQGPQGPSGALTRSVSYSENLPRETIRAEI
QQYLNSDSVRRTIVGPPGPQGPKGQKGERGEPGYSQSFIQTQSYPQGDARYSSQQFDVNK
LTESLDYSSVAMKVTDYIKNQGLLQRYISDGPWRTNVRAIQGPPGPPGPPGPPGTSRVIG
AYGNVTADLMDFFRRHGTIPGPPGSPGPKGERGYPGPKGDTGDAGPPGLPGIPAPYTVQI
PHKVQRREAGDKPSVRQRRHRRQATGG
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atggacgatttaacaaggcagatggagatttcaggagagaaggttttgacagaaaccgta
acctccacaagcaggctgacttctctcccacccaagggaaccagtggatcaaatcacagg
aatatgtccagtggtgctggagggctgggctttgagaagaatgtcttaacgcagaacagc
agtggaacctacttctcttcatcctctgtaggtgtgacaagtaactacagctcctcctca
gggatctaccttggaggagactcctcaggtggaggcgagggaggtgggagctacatagat
ggagagggttatgggagtggaggaggtggaggaagaggggaaggaggcagtggaagcact
tatcttgtgagctccgtgtcgaaggtcaggtccagctcatcaggcggtgccaggagagct
cagactgctgggtcatcagttgggctctcaccaggtttccgcgagaggaagaccatatcc
agccgctcgggaggttatgatgggagttccagtgccaattcttcaccagaatttccacgc
aaagactatgggaactactgctccggtgccacaagagggaggagcgaaagcagagagagt
gaaatcagagccaggttacaaagtgcctccccatctgccggaagatgggctgagctggaa
gacgtgaagaagctgctgaagggacgctccagcagcgtcagtcctacccgctcctccagc
gcctccatcacgctgccagtaccgaaaaaagccagtgcggagagcaagaccctctcagtg
gccactcagtcggtttcaactttatttgaacctggtgttcaatcaagtggcttcaacacc
atcgatgtgtcaggcctctatgacggcagactgacatccaggcagcgtgatactggcgtc
caaacaggccaacatgctgtcactgtaaaatcttgccactgcgacgctggagtcaaatcc
agccagtatgacgtcagcttgggtgcagctcagtatgatactggtctgaagtcaagccag
tatgttgtttgtctgagttcagctcagtacgatactggtgtgaagtcgggaggatatgac
atgagcctgaaatcagggagatatgatactggatttaaatctagccagtatgacaccatt
gggagatcaggccagtacgacaccctggattcagcctttcccacattctcttggtccacc
accaccctgccctcctcagccactgccgtcttagctggaaactctggcagttacacctac
cagctcggccaggtcagcaccaataacatgtcaggaggctcgccgcctatcagccccgcc
ccagcaccatctctatcagtttatggctttcagaataacctggctcccacctctgctgct
gtgctctccaccaatgccgtcaacgtttcttctagcatgggaggttatggcgtccagaag
aatgtgtcaaatggtggtgctgccatcagctcagggttctctacagctacaaggtcccaa
acagatgatgcctacaagagagattataaatatactgtctctgaaaaggggaacgttcca
gccaggagggagggggaaatgctcatcctggcaaaagacagcgggaaacagtttaccacc
agcagcagtgctcaggttggaggaggttcactgtcaggcgactccttaaagaaggagaag
cttatttccagctacatcgacacaggaaccatgaaaacagatgcaggcaactcgtactat
ggatcatctggagtcctaatgaaagacaaggcgacatatgcagagattcatagggacagc
ggcgtctttggaggaggaggattctgctgttgctctgactcctgctgctcctggtggaag
tggctgctgggtttgctgctcctctgtctgctcctactcgggctcctgtttggcctcatt
gcactggctgaggacatgaggaggctcaagaaacgggtggcagatctggagaccaaggcc
ttgttcaccggcgctgagtctagtcggctgattggtggaggtggaggaacaggctccgac
aagaccttcattctgggaggtggaggtggaggcactggctctgataaaaccgtcattttt
ggaggtggtgcaggaggtggaggaacaggctctgataaaaccatcatttttggaggtgga
gcaggaggtggaggaacaggctctgataaaaccatcatttttggaggtggagcaggaggt
ggaggaacaggctctgataaaaccatcatttttggaggtggtgcaggaggtggaggaaca
ggctctgataaaaccataatttttggaggtggtgcaggaggtggaggaacaggctctgat
aaaaccattgttggagagggaggtggaggcaaaatctctgctgctggggccggtacgggc
agcactggtgcctcttttaatgggagcgccagcagtgatggtaatggtttcaacactggc
accggtgtttggaacggcgttgggactgctgtgagtggagcatacattgacaacgtcctt
cagacaaccatctatagaatgttaagatctgaaatgcagtcgcagaccttcaaagccttt
ttagcaacctcagtgcagggagagagggggttacctggacccaaaggcgaccctggattg
aaaggagaagctggcgtccctggacttccaggtgttccaggtctgataggacacactggc
cctgagggccctaaaggacagaaaggaagtcaaggtgagcatggagtagatggaccacaa
ggtattaggggccgcgacggaccacctggacctagaggcgacatgggacctccaggcttt
ggacagaaaggagataaaggggctcaaggtgaacctggttctgttggacctgctgggcct
cctggatcaaaaggtccacaaggaatccaagggttacctggcccacctggtcaaccaggt
gctcagggcttccgcggtgaagcaggactacctggacaaaaaggggatagagggctcgct
ggatttcaaggacttaaaggtgaacctggtgaaaggggagtcagaggtctgcaaggtgaa
cgtggtttaccaggtctccaaggacctgcaggagagaaaggctccaaaggatcaatggga
ctttctggacaagatggtcaaaaaggatcaagaggagaccaagggcctcctggactcagg
ggtgctgctgggcctcctggagatgctggacctgcaggaccaccaggacttcaaggagca
ccaggcatcccaggaaatcctggtcaaccaggaatcaaaggtgaaaccggccaaccagga
cgaatcatcaatgcagctggttcaacatccattggcatcccaggaccacctggacctgct
ggtccccctggtcctgcaggtcctccaggactatcaggtccgattggccctgctggtcta
cctggtcaacctggtcctaaaggtgacagaggagagatgggaataacagcaagaaccagc
gaaactgtacatttatcaacaacaggcagtaaatcattttttttttttgctttaggtcgg
tacaccaatggaggaaacacacatggcccaccaggtccacctgggcctcctggacctcct
ggacgtccaggcgactcaagacaaggacctcctggacctctaggacccccaggagagcca
ggttatggaagaccaggacctaaaggagaaaagggagatgcaggctcttcatcaagctca
ggaacatattatcgtggaccaccaggacctcctgggacacctggtcttaaaggagaaaca
ggttctccgggaccccgtggatacacaggtgaaccaggcccaccaggtagacccggaagc
tctactggttttgcaggaaatgtgatccctggacccacaggtccaccaggacctcctgga
gtcccaggattacctggagtgaaaggagacactggagctccgggaataccaggctcagtg
acagtcacctccagccgttctggtcccccaggtcctcctggtcctcctggcccaccaggc
aattttggcgactccacagagatgcggcagtacatttcagactatctgagtagatacaga
ctgagtggtatgtcgggccctccaggtccccctgggcccccaggccctccaggcccctta
acaggaaccatacaggacatctctactcgtgtcattgcatacctgcgacgttcagattct
ggcttcagctttggagttcagggacctccaggaccacctggtcctcccggacctggctct
ggatccctaactgtcaatgctctcatcaccatgcttcagagagatgatgtgagaaggtat
ttgtcaggacctccggggccacaaggaccgcctggaccaccgggggcctcaggcgaactt
acaggcaattacagaatggaggagatagccatgtatgtcttcaatatcatgaatgagagg
gggattgcaagaggtccacaaggtcccccgggtcctcctggagctccaggtataggaggc
tctggcatcaacactgctatgattgactactccgaactcatccgcaatgcagatttccgc
tcctggatggcttctgttatgcggcagggtccgcccggtccaccgggtaggccagggctg
ccaggtcctgctggtcctcaggggcctccaggggtctccacatccactgtctatgggtcg
ggcagtcgtggctacagcctagaggagattcaacgctacctgcagggttctgggttccga
ggtcttcctggcccccctggtcctccaggtccccagggaccacagggaccatcaggcgct
ctcactcgatcagtgtcctacagtgaaaacctccctcgggaaaccatccgtgctgaaatt
cagcagtatctgaacagtgacagtgttcggcggactattgtcggacctccgggtcctcaa
ggtccaaagggtcagaagggggaacgtggagaacctggctactcccagagcttcatacag
acccagagttacccacagggcgacgctcgctacagctcccagcaatttgatgtcaacaag
ctcaccgagtccctcgattattccagcgttgcgatgaaagttacagactacataaagaat
caaggcctgctgcagcggtacatctctgacggtccttggaggacaaatgtccgagctatt
caagggcctccaggtccccctggccctccgggacctcctggtactagccgcgtgattggg
gcatacggaaatgtcactgctgacctgatggacttcttcaggagacatggcactattccc
ggacccccaggaagcccaggaccaaagggagagagggggtacccaggacccaaaggagac
acgggtgatgcaggacctccaggtctacctggaatcccagcaccctacactgtccaaata
ccacacaaagtgcaaaggcgggaagcaggtgataaaccttcagttcgtcaaagacgtcac
cggcgccaagccactggtggctga
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integrated database retrieval system
