Cyprinodon tularosa (White Sands pupfish): 119791056
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Entry
119791056 CDS
T07496
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119791056 (dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ctul03041
]
119791056 (dhx8)
Enzymes [BR:
ctul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119791056 (dhx8)
Spliceosome [BR:
ctul03041
]
Complex C
Other components
Step II factors
119791056 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
GIPC1_GH2
nSTAND3
AAA_16
Flavi_DEAD
T2SSE
TsaE
PhoH
Sigma54_activ_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
119791056
NCBI-ProteinID:
XP_038152821
LinkDB
All DBs
Position
Unknown
AA seq
1222 aa
AA seq
DB search
MADGGVDELSQLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKEPSFDGFKVLLLEN
GAEFADSLIGNLLRLIQTMRPPSKASTSKASDVSFKPKTEKDRLKELFPALCKPNDPSPK
RVLDEDDVKVAADAIKELEMLMPSVSGGDSKISTTKSEKSRRRSRSRERDRDRHRDRDRD
RDRDRDRDRDRGGDGKRRHRSRSRSRSRSWDRDRHRDRDRDHGKRRDKSYRWSERSPSPR
KDSDKDSERWKDKHVDRPPPEEPSVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISE
LRREGRVANVADVVSKGQRVKVKVLSFTGSKTSLSMKDVDQDTGEDINPNRRRNMGPEGG
DDVSMRNPDRPSNLNLGHAPEMEQDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPD
FDDETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMM
QSALAKERRELKQAAREAEMDSIPMGLNKHWVDPLPDADGRQIAANMRGIGMMPNDIPEW
KKHAFGGNKASYGKKTQLSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQI
TQYLAEAGYTTRGKIGCTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVI
KYMTDGMLLRECLIDSELGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSA
TLDAVKFSQYFYEAPIFTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDILV
FLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVIIA
TNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGK
CYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAM
EQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF
YRPKDKQALADQKKAKFHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDI
RKQMLGIMDRHKLDVVSCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPS
SALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTRLSKQKKQQRL
EPLYNRYEEPNAWRISRAFRRR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atggcagacggtggagttgacgagttatcgcagttggaatatttatctttggtgtcgaag
gtctgcacggaactcgacaatcatctgggaattaacgacaaagatttagctgagtttgtt
attagtcttgctgaaaaagagccgagcttcgatggattcaaagttcttctgctcgaaaat
ggagccgaattcgctgattccctcatcggtaacttgctcagactcattcagacgatgcga
cccccatctaaggcatcaacaagtaaagcctctgatgtttcattcaagccaaaaacggag
aaagacaggctgaaggaattgtttcctgcactgtgtaaacccaacgatccatcaccaaag
cgggtgctggatgaagacgacgtgaaagtcgctgctgatgcgataaaagaactagagatg
ttgatgcccagtgtcagtgggggcgactccaaaatcagcacgaccaaatcagaaaagagc
agacgtcgtagccgaagcagagaaagggacagagaccggcatagagacagagatcgtgat
agagacagggaccgggatagagaccgggaccggggaggagacgggaagagacggcaccgt
tctagatctcggtccaggtcccgctcctgggatcgtgaccgacacagagatagagaccga
gatcatggtaaaagaagagacaagtcttaccgctggtctgagcgttcacccagccctaga
aaagactcggacaaggactctgagcgctggaaagacaaacacgtggaccggcctcctcca
gaggagccttctgtgggcgacatttacaacggaaaagttaccagcatcatgcagtttggc
tgcttcgttcagctcgagggtttaagaaaacgctgggagggattggtccacatttcagag
ctgcgcagagagggtcgggtcgctaatgtggccgacgttgtcagcaagggccaaagagtc
aaagtgaaggtgctctccttcactggctccaagacaagcctaagtatgaaggatgtggac
caggacaccggagaggatatcaaccccaacaggagaaggaatatgggtccagaaggagga
gatgatgtctccatgaggaaccccgacagaccgagtaacctgaacctgggccacgccccc
gagatggagcaggacgacaccttggagcgcaagaggctcaccaagatctctgacccagag
aagtgggagattaaacagatgattgctgccaacgttttgtccaaggaagaattcccagat
tttgatgacgagacgggaattcttcctaaagtggatgatgaagaggacgaggacctggaa
atcgagcttgttgaagaggagccaccgtttctaagaggacacaccaaacagagcatggat
atgagcccagttaaaattgttaagaatccagacggctcgctgtcacaggcagccatgatg
caaagcgctctggctaaagagagacgggagctgaaacaggccgctcgagaggcagaaatg
gactctatccccatggggctgaacaaacactgggtggacccgctgccagacgctgatggt
agacagattgctgccaacatgagggggattggaatgatgcctaatgacattccagagtgg
aagaagcatgcttttggggggaacaaggcctcgtatggaaagaaaacgcagctgtccatc
ttggagcaaagagaaagccttcccatctacaaactaaaggagcagctcattcaggcggtt
catgacaaccagatcctgattgtcattggagagactggctctgggaagaccacccagatc
actcagtacctggcagaggcaggttacaccaccagagggaagatcggctgtacgcagccc
cgccgtgtcgccgccatgtcggtggctaagagggtctcggaggagtacggttgctgtctg
ggacaagaggtgggttataccatccgattcgaagattgcaccagccctgagacggtgatc
aagtacatgacagacggtatgctgctgagggagtgtttgatcgactccgaattgggccag
tatgccataatcatgctggacgaggcccacgagaggaccatccatactgacgttctgttt
ggtctccttaagaagactgttcagaaacgcacagacatgaagctgatcgtaacgtcggcc
acactggacgctgtgaagttctcccaatatttctatgaagcccccatcttcaccatccca
ggccgaacatatccagtggaggttctttacaccaaggaacctgagacagactatttagac
gccagcctcatcaccgtcatgcagattcatctgactgagcctccaggtgacatcctggtg
tttttaaccggacaggaagaaatcgacactgcctgtgagattctgtatgagaggatgaag
tctcttggacctgatgtccctgaactcatcatccttccagtttattctgctctgcccagt
gagatgcagaccagaatctttgatcctgcacctccagggagcagaaaggtcataattgct
acaaacatcgcagagacctctctgaccatcgatggaatctactacgtggtggatccaggc
ttcgtcaaacagaaggtgtacaactccaaaactggtatcgatcagctggtggtgactccc
atttcacaggcccaggctaaacaaagggcaggtcgtgccggaagaactggtcctgggaaa
tgttacaggctctacacggagagagcttacagagacgagatgctgactaccaatgttcct
gagatccagaggaccaacctggccagcacagtgttgtctttaaaggccatgggcatcaat
gacctcctgtcttttgactttatggatgctcctcctatggagactttgatcacagccatg
gagcagctttacactttaggagctctagatgatgaaggcttactaacacgcctggggaga
aggatggcagagtttcctctggagcccatgttgtgtaagatgttgatcatgtccgtccac
cttggctgcagtgaagagatgctcaccattgtgtccatgttgtctgtgcagaacgtcttc
tacaggccaaaggacaagcaggccttggcagaccagaagaaggcaaagttccaccaacct
gagggagaccacctcaccctgctggccgtatacaactcatggaaaaacaacaagttttcc
aacccctggtgctacgagaacttcatccaggctcgctccctgcgcagagctcaggatatc
cgcaaacagatgctgggaatcatggacagacataaactggatgtggtgtcctgcggtaaa
gccacagtgcgagtccagaaggccatctgcagcggtttcttcaggaatgcagccaagaag
gatccccaggaaggctacagaacactgatcgaccagcaagttgtctacatccacccctcc
agcgctctgttcaacagacagcctgaatgggttgtgtaccacgagcttgtgctgaccacc
aaggagtacatgagggaggtgacgaccatcgatcctcgatggctggtcgaattcgcgccc
gccttcttcaaggtctccgaccccacccgcctcagcaagcagaagaagcagcaacgcctg
gaaccgttatacaaccgttacgaggaaccgaacgcctggagaatctcccgcgccttcaga
cgccgttga
DBGET
integrated database retrieval system
