Cyprinodon tularosa (White Sands pupfish): 119791538
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Entry
119791538 CDS
T07496
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04382
Cornified envelope formation
ctul04510
Focal adhesion
ctul04512
ECM-receptor interaction
ctul04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119791538 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119791538 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119791538 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119791538 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ctul04147
]
119791538 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
ctul00536
]
119791538 (col4a4)
Exosome [BR:
ctul04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119791538 (col4a4)
Glycosaminoglycan binding proteins [BR:
ctul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119791538 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119791538
NCBI-ProteinID:
XP_038153614
LinkDB
All DBs
Position
Unknown
AA seq
1680 aa
AA seq
DB search
MGRGIVRIGKTETPPALLKETHSYPSGRCSLVLFTAPPAAPGGDPKEPCDGRDCTTCQCF
PAKGARGSPGPLGPQGPQGPPGFPGLQGLLGPRGHKGDEGATGRPGEKGDVGIIGLPGFP
GIEGIPGHPGPAGGRGHPGLDGCNGTRGNPGYPGLPGEQGPYGEPGITGPKGFKGDPAYY
FIQFPGVPGNAGPIGLPGLPGEEGLPGPIGPPGPIGWDGDDGIPGRPGLRGQPVSHLSSL
IAFNIGQKGRLIPGPKGDEGEQGPQGEPGPFEFIEPPENFYPKGEKGSLGERGMPGIPGP
LGQDGPPGIKGEKGIVGFPGDRGDPGRPGPFGRKGDKGMRGSQGLPGLIGQDGAKGSFGE
PGPKGLPQNGENGDDGDPGPPGSMGSRGDTGPKGMQGPPGSPGRSMPGPPGMTGQKGEPG
SKGDRGDPGQILKEGYPGERGKPGPPGRRGPKGRPGIPGTYCLPGIPGLNGDPGDLGFQG
ERGYPGPKGDLGTCLCGPPVEIRGPPGPEGPGGRKGSSGPPGDPGPRGEMGSPGDRGLKG
AEGMIGSQGVKGFKGQKGDFRVVDFKGEKGNMGDLGPEGTRGFSGRNGLPGPPGPPGNPG
IEGESLIGFPGDRGCKGYPGQKGVLGPPGRRGSSVFGAVGERGPPGNPGIVGFPGPKGQK
GVKGDSPPCIPQIPGPQGQKGDPGIPGFPGPLGPKGYIGFPGPDGPKGDKGQTGPPGMPG
LKGAKGCDGDPGEEGDMGLSYDGTPGFPGAPGPPGLPGPRGDHAYGCQGPPGLPGRQGSP
GHKGVPGSPGNKGGPGVPGSPGDPGVKGQKGNEGAKGQRGLKGLSLDQCDAGPSGEIGFR
GPPGPEGHQGCPGPKGLKGDNGYSQAGRKGALGENGVPGFPGVRGPQGPQGPIGNDGQPG
PLGQKGLIGPQGFEGRPGIPGKKGSIGPQGRTGEMGLRGQDGPPGYVGSKGQKGCVGNPG
PPGDCKSIPINGPPGPQGLPGSIGFPGPRGYKGFQGTDGRPGFPGSNGPPGIRGSQGPKG
PLGKKGLPGSPGCKGHMGYSGFPGQNGEPGDPGCPGNPGNPGNSGYPGAKGDIGESIGVH
GPPGDTGHSGNIGCSGPPGPPGQSGPLGTDGAPGPKGCKGHKGFPGRTGESGVVGPPGCR
GRQGPPGFPGAPGAKGVQGQDGYTGHKGAQGPPGLHGLDGLSGRKGAMGMKGLCEGGNGG
ERGPPGPAGPPGPPGPPGTSQNGPRGPPGPQGPRGPLGGYGPPGPPGDDCRNPNPGPPGD
PGAEGLKGDPGNYGDQGDPGPSFPFPGDMGDNGWPGYQGPKGSQGFPGPAGPKGNPGNQG
CKGMRGDPGTMGQPGHKGVQGPYGSRGAKGRKGEKGREGLKGEPGRVLPYEYPPILEGPE
GLPGPPGAKGEQGLMGDPGPKGLNGVKGNRGEDGSLGSGGPKGDPGATGRPGLPGENGVL
GEKGFPGPPGDRGKPGQTTVVTMGFLLVKHSQKKEPPSCPPNMQQLWIGYSLLYMEGQER
AYSQDLGQAGSCVRIFSTMPFSVCGTKQCQYAGRNDKAYWLSTMERAPNRPFNGIAIENH
ISRCVVCEAPSAPVAMHDSNSKEPPSCPPNWTSLWTGYSFIMFTGGGDEGGGLSLMSPGS
CLKEFKAQPFVECQGARGTCHFFANVYSFWLTTFKGTNTALTDSEQQREHVAQCRVCIKM
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atgggacgcggtattgtgcgtattgggaaaactgaaactccaccagcacttctgaaggaa
acccactcctacccgtcaggcaggtgttcactggtgctgttcacagctcctccagcagct
ccagggggtgacccaaaggagccatgtgacgggcgggactgcaccacctgccagtgtttt
ccggctaaaggagcgaggggttccccgggtcctctgggtccgcagggcccccaggggcct
ccaggctttccgggccttcagggtcttctgggaccaaggggtcataaaggagatgagggg
gcaacaggacgtcctggtgaaaaaggagatgttggaatcataggccttcctggttttcca
ggaatagagggaatcccgggtcacccaggcccggctggagggcgtggccatccaggtttg
gatggatgtaatggaaccagaggaaaccctgggtaccctgggcttccaggtgaacagggg
ccttatggagaaccgggtatcacagggccgaaaggctttaaaggagatccagcgtactac
tttatccagttccctggagttcccggaaatgctgggcccattggattgccaggtttgccg
ggagaagagggtctaccaggaccgattggacctcctggtccaataggatgggatggagac
gatggtatacctggtcgtcctggtttgaggggtcagcctgtaagccatctttccagcctg
atagcattcaatatcggtcaaaaaggtcgtttaattccaggaccaaaaggagatgaggga
gaacagggaccccagggtgaaccagggccgtttgagttcattgaacctccagagaatttc
taccccaaaggagagaagggatctctaggagaaagaggaatgcctggcattccagggccc
ctgggtcaagatggcccccctggcatcaaaggagagaaggggattgttggatttccagga
gacaggggggatcctggtcgaccgggtcctttcggacgaaaaggtgataaggggatgaga
ggaagccagggtcttccaggtttgataggtcaagatggtgctaagggcagtttcggcgaa
ccaggccctaaaggtctccctcagaatggcgaaaatggggatgatggggatcctgggcca
cctggatcaatgggtagtcgtggtgacacagggcctaagggaatgcaaggccctccagga
tcgccaggaagatcaatgcctggacctccaggtatgactggtcagaaaggtgaacctgga
tccaaaggggacagaggagaccctggtcagattttaaaagaggggtaccctggagaacgt
ggaaaaccaggccctccaggacggagagggcccaagggaaggccgggtattccaggaacg
tactgtcttccagggatcccaggcctcaatggagatccaggtgacctaggctttcaagga
gaacgcggttatccggggcccaaaggtgatcttggtacatgtttatgtggccccccagtt
gagataaggggccctcctggtcctgaaggaccaggagggagaaaagggtcatcaggtccc
ccaggagacccaggcccaagaggagagatgggttcacctggagacagaggattaaagggt
gctgagggcatgatcgggtcccagggtgtgaaaggctttaaaggacagaaaggagatttc
agagtagttgattttaaaggtgaaaagggaaatatgggtgatttaggccctgaaggaaca
cgaggattctcaggaagaaatggattacctggtcccccgggaccacctggtaatccagga
attgagggtgaaagtctcattggttttcctggagacagaggctgcaaaggataccctgga
caaaagggagttttaggaccaccaggtcgccgaggaagcagtgtgtttggggccgttgga
gagcgtgggccccctggaaatccaggaattgtaggatttcctggaccaaaagggcaaaag
ggggttaaaggtgacagtcctccctgtatccctcaaatccctggtccccaagggcagaag
ggagaccctggaataccaggtttcccaggtcctctgggtcctaaaggttatataggtttt
ccaggaccggatgggcctaaaggagataagggacagactggtcctccaggaatgcctggc
ctcaaaggagctaaaggttgtgatggagatcctggagaagagggagacatgggtttgagt
tatgatggaactccaggttttccaggagccccaggtccccccggactcccaggaccaaga
ggagatcatgcttatggctgccagggacccccaggcctgcctggacgacaggggtctcca
gggcataaaggagtccctggctccccagggaataagggagggccaggtgtcccaggctct
cctggggaccctggagtaaagggacagaaaggaaatgaaggggccaaaggtcaaagaggc
ctcaaaggactttcactggaccaatgtgatgctggaccttctggtgaaattggcttccgg
ggacctccgggacctgaaggacatcaaggttgtcctggtccaaaaggtctcaaaggggac
aatggttattcacaggctggtcgtaaaggtgcgcttggagaaaatggagttccaggtttt
cctggtgtacgggggccacaggggccacaaggtcctattggaaacgatggccagccaggg
ccccttggtcaaaaaggtctgatcgggccccagggctttgagggacgaccaggaattcca
ggaaaaaaaggctccattggtccccaagggaggacaggagagatgggcctgaggggacaa
gatggacctccgggttatgtgggttcaaaggggcaaaaaggttgtgtaggcaacccaggt
cctccgggggattgcaaaagcattcccataaacggcccaccaggaccacagggactgcct
ggcagcatcggatttcccggaccacgaggttataaaggttttcagggtactgatggaagg
cctggatttccaggctcaaatggacctccaggtattaggggatcccagggtcccaaaggg
ccactaggcaaaaaagggctacctggatcccctggatgtaaaggacatatgggatacagc
ggcttccccgggcagaatggagaaccgggagacccaggatgtcctggaaaccctggaaat
cctggtaattcaggatatcctggagctaaaggtgatataggggagtctattggtgttcat
ggtccaccgggggatacgggacattctggaaacattggatgttctggcccccctggccct
ccaggacaatcaggacctctgggcactgatggggccccaggaccaaaaggatgcaaggga
cacaaagggtttcctggaagaactggtgaatcaggggtggttggtcctccaggttgcaga
ggtcggcaggggcctccaggttttccaggtgcaccaggagctaaaggtgttcaaggacaa
gatggttacacaggacacaaaggagctcaagggccaccagggcttcatggactggatggg
ctaagtggacggaaaggggccatggggatgaaaggtctgtgtgagggtggtaatggaggt
gaaagaggtcctccaggacctgcaggtcccccaggtcctccaggtccccctggtacctcc
cagaatggaccaagaggacccccaggtccacagggacccagagggcctctaggtggttat
ggaccaccaggtccacctggagatgactgtagaaacccaaatccagggccacctggggat
cctggtgcagagggcctgaaaggagacccaggtaactatggtgaccaaggagacccaggc
ccaagctttccatttcctggggacatgggagacaatggatggccgggataccagggtcca
aaaggatcacagggatttccggggccagcaggaccaaaaggcaaccctggaaaccaaggc
tgtaaaggaatgagaggagatccagggacaatgggacaacctggacataaaggtgtgcag
ggtccctatggatcccgaggggccaaaggaaggaagggggagaaaggacgagagggttta
aagggggagccgggacgagtcttgccatatgaatatccaccaatacttgaagggcctgaa
ggactaccaggtccccctggtgctaaaggagaacagggcctgatgggagaccctggtcca
aaagggctgaatggggtgaaggggaatcggggggaagatggatcactgggttctgggggt
ccaaaaggcgacccaggggccactggaagaccaggtctaccaggagagaacggagtgttg
ggagaaaaaggttttccgggtccgccgggggaccgaggtaaacctggacagaccacagtc
gtaacaatggggttcctgctggtaaagcacagccaaaaaaaggagcctccaagttgccca
ccaaacatgcagcagctttggattggatacagtctgctgtacatggagggccaggagagg
gcttactcccaggatctaggtcaggctggatcctgtgttcgtattttctccaccatgccg
ttctccgtatgtggtaccaaacaatgccagtacgcaggtcgaaatgacaaagcctattgg
ctgtcaacgatggagagggctcctaataggccatttaatggaattgccattgagaaccac
atcagtcgctgtgttgtgtgcgaagccccctctgcacctgtggctatgcacgattccaac
tccaaggaaccgccaagctgtccccccaattggacatctctgtggacaggatattccttc
attatgtttacaggtggaggtgatgagggaggcggcctctcgctgatgtcccctggcagc
tgtctgaaagagttcaaagctcagcccttcgtagagtgtcagggagctcggggaacctgc
cacttcttcgccaacgtctacagcttctggttgaccaccttcaaaggcaccaacactgca
ctgaccgactctgagcagcagagggagcatgttgctcagtgtcgagtctgcataaagatg
tga
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