KEGG   Cyprinodon tularosa (White Sands pupfish): 119791962
Entry
119791962         CDS       T07496                                 
Symbol
rfc2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
ctul  Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03030  DNA replication
ctul03410  Base excision repair
ctul03420  Nucleotide excision repair
ctul03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ctul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    119791962 (rfc2)
   03410 Base excision repair
    119791962 (rfc2)
   03420 Nucleotide excision repair
    119791962 (rfc2)
   03430 Mismatch repair
    119791962 (rfc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ctul03032]
    119791962 (rfc2)
   03036 Chromosome and associated proteins [BR:ctul03036]
    119791962 (rfc2)
   03400 DNA repair and recombination proteins [BR:ctul03400]
    119791962 (rfc2)
DNA replication proteins [BR:ctul03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    119791962 (rfc2)
  DNA Replication Termination Factors
   ELG1-RFC complex
    119791962 (rfc2)
Chromosome and associated proteins [BR:ctul03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    119791962 (rfc2)
DNA repair and recombination proteins [BR:ctul03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     119791962 (rfc2)
  Check point factors
   HRAD17(Rad24)-RFC complex
    119791962 (rfc2)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 AAA_14 RCF1-5-like_lid AAA_16 Viral_helicase1 Mg_chelatase AAA_11 Rad17 AAA_24 RuvB_N AAA_19 MipZ DEAD nSTAND3 AAA_5 AAA_18 AAA_assoc_2 DNAX_ATPase_lid AAA_30 MeaB ABC_tran AAA_28 AAA_25 NTPase_1 RNA_helicase AAA_23 AAA_2 DUF815 SLFN-g3_helicase FtsK_SpoIIIE MCM bpMoxR
Other DBs
NCBI-GeneID: 119791962
NCBI-ProteinID: XP_038154295
LinkDB
Position
Unknown
AA seq 357 aa
MEVEMSETENNQKPAGSELKTDTEAGASSSKGPGGSYELPWVEKYRPVKLNEIVGNEETV
SRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGAAMKDAVLELNASNDRGIDVVR
NKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRIMEIYSKTTRFALACNASDKI
IEPIQSRCAVLRYSKLTDGQILARLQEVVEKERLAVSDDGLEAVIFTAQGDMRQALNNLQ
STNSGFGYINSENVFKVCDEPHPLLVKSMLGHCVEGNIDAAYQVVEQLWALGYSPEDIIG
NIFRVCKTYQMAEFLKLEFIKEIGFTHMRVAEGVNSLLQMAGLLGRLCSKTAPPAAS
NT seq 1074 nt   +upstreamnt  +downstreamnt
atggaggtagaaatgagcgagacagaaaacaaccagaaaccggctggtagtgagctgaag
acggacacggaggccggggcctcctcatccaaaggccccggcggctcctacgagcttccc
tgggtggagaaataccggccggtgaagctgaacgagatcgttgggaacgaggagacggtg
agccgcctggaggtgttcgccagggaggggaacgtcccgaacatcatcatcgcaggacct
ccagggacgggaaagaccaccagcatcctgtgtttggctcgagctctgctgggagccgcc
atgaaagacgccgtcctagagctgaacgcctcaaacgacagggggatcgacgtggtgagg
aacaagatcaagatgtttgctcagcagaaggtcacgctgcccaaagggcgacacaagatc
atcatcctggacgaggcggacagcatgacagacggagctcagcaggcgctgaggaggatc
atggagatctactccaagacgacgcgcttcgctctggcgtgcaacgcctccgataaaatc
atcgagccgatccagtcccgctgcgccgtgctgcgctactccaagctgacggacggacag
attctggcccggctgcaggaggtggtggagaaggagcgcctggcggtgtccgacgacggg
ctggaggccgtcatcttcacggcacagggggacatgagacaggcgctgaacaacctgcag
tccaccaactctgggttcggctacatcaacagcgagaacgtcttcaaggtgtgcgacgag
ccccaccccctgctggtgaaaagcatgctgggacactgcgtggaggggaacatcgacgcg
gcctaccaggtggtggagcagctgtgggcgctgggctactccccagaggacatcatcggg
aacatcttcagggtctgcaagacctaccagatggcagagttcctcaaactggagttcatc
aaggagatcggcttcactcacatgcgggtcgctgaaggcgttaactccctgctgcagatg
gccggcctgctggggcggctctgcagtaagacggcaccccctgctgccagctga

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