Cyprinodon tularosa (White Sands pupfish): 119792008
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Entry
119792008 CDS
T07496
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ctul01009
]
119792008 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctul03019
]
119792008 (hdac6)
04131 Membrane trafficking [BR:
ctul04131
]
119792008 (hdac6)
03036 Chromosome and associated proteins [BR:
ctul03036
]
119792008 (hdac6)
Enzymes [BR:
ctul01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
119792008 (hdac6)
Protein phosphatases and associated proteins [BR:
ctul01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119792008 (hdac6)
Messenger RNA biogenesis [BR:
ctul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
119792008 (hdac6)
Membrane trafficking [BR:
ctul04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
119792008 (hdac6)
Chromosome and associated proteins [BR:
ctul03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
119792008 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
DUF6761
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
119792008
NCBI-ProteinID:
XP_038154361
LinkDB
All DBs
Position
Unknown
AA seq
1083 aa
AA seq
DB search
MSAGSDPPGIKPSRRSPRLLPQADAEKQKGGNSLQEAKRRGRMERSREEELSGRLKTLDL
SSRSAASGTGLVYSQIFTHHQNLWDLSHVESPSRVTSIMSELQRQELLDVCVSVEPREAT
EDELLLAHTKLYVDAMKETQKMTQAELQSLSERYDSVYLHPESFQVCATAVGSVLQLVDR
VLTSELRNGFAVIRPPGHHAQADQPNGFCVFNSVAIAARYAQRRHSVNRVLIVDWDVHHG
QGIQYLFQEDPSVLYFSLHRYEGGAFWPHLPESDCSFVGSGRAEGRNINLPWNETGLSDA
DYIAAFQQVLLPVASEFQPQLVLVSAGFDAAAGDPKGEMCVSPQCFHILTHMLMSLAEGR
LVLALEGGYNLQATAEGVAACVRALLGGACPPLNPPTALSDSALHSISQTVSALYPYWAS
LQVLAGSVTEGRGARTAANHSGPKPASVDTSFTKTTGLVYDEKMMEHVNLWDRHHPEQPQ
RTFKIFSRHQQLGLVDRCHRIQARLATEEELAMCHSLRHIEQMKATTEMKPRDLHKLGDN
FTSIFLCNQSFQCAQMAAGSCFNAVDSILTGQVRNCVAIVRPPGHHAERDVPCGFCLFNT
AALTARYAQKNSQDSQLRILILDWDVHHGNGTQHMFEDDDSVLYISLHRYDNGTFFPFSE
DAAPYRVGVAKGSGYNVNVAWSGGRMGDSDYLAAFHHVVMPIATEFNPGLVLVSAGFDAA
RGDPLGGYNVSPEGYAHLTHMMMSLAGGRVLVILEGGYNLTSISDSMAMCTSVLLGDPPP
SLVTPLPPPHHCAVATIREVIRQHLPYWRSLRIQVPESVQEAVPSPKHRGKRSSQGRKSE
KPPCVGQVSMTEHGLEQLMQGLASLDIHKTSANQDKVKPSSTPPEAAAAKVEGDMKTENS
QSAESMQPQSVTTAAKADQAGTDPEARAESGRGEEPLDGSGAEPEEEGACGWSKPQVSLE
MTCSAEMGGDTLYVVDPLPWCPHLDAVKPLPHSGIDVFQPCGDCGSDAENWICLTCYQVC
CGRYVNEHMVTHGATLEHPMVLSFSDLSVWCYLCESYVHHQVLFEAKNAAHFAKFGEEVP
PWS
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctggatcagatcctcccggaatcaaaccatccagaaggtctcctcgcctgttg
ccacaggccgacgccgagaagcagaaaggaggaaacagcctgcaggaggcgaagaggaga
ggaaggatggagaggagcagagaggaggagctgagcggcaggctgaagacgctggatctg
tccagcaggtctgcagccagcgggaccggtctggtttactcacagatcttcacgcatcat
cagaacctgtgggatctgagccatgtagagagtcccagcagagtgacgtccatcatgtcg
gagctgcagaggcaggagctgctggatgtctgcgtcagcgtggagcccagagaagctaca
gaggacgagctgctgctagctcacacgaaactctacgtagacgccatgaaggagactcag
aagatgacccaggctgagctgcagagtctgtctgaaagatacgactcagtctacctccat
ccggagtcattccaggtgtgtgcgacagctgttgggtcggtcctgcagctggtggaccgg
gttctgacctctgaactcaggaatggattcgctgtcatcagacctccaggtcaccacgct
caggccgaccagcccaacgggttctgtgtgttcaacagcgtggcgatcgcagcccgatac
gcccagagacgccactctgtcaacagggttctgatcgtggactgggacgtccatcatggt
cagggtatccagtatctgttccaggaggatcccagcgtcctgtacttcagcctccaccgc
tatgaggggggggccttctggcctcacctgccagagtcagactgcagcttcgtgggcagc
gggcgagctgaaggcaggaacatcaacctgccttggaacgagacgggtctgagtgacgct
gattacatcgctgcgttccagcaggtgctgctccccgtcgcctctgagtttcagcctcag
ctggttctggtctcagccggattcgacgctgcagccggagacccgaagggggagatgtgc
gtgagtcctcagtgtttccacatcctgacccacatgttgatgagtttggcggaagggcga
ctcgtcctggctctagagggggggtataacctgcaggccacagcagagggagtagcagcc
tgtgtcagggctctgctgggcggagcctgtcctcctctgaacccgcccactgctctctct
gacagcgccctgcactccatctcccagaccgtctccgctctgtacccatactgggcctcg
ctgcaggttctagctggatccgtgaccgaggggcgtggcgccagaaccgcagccaatcac
agtggcccaaagccagcctccgtggacacgtcttttaccaagacgacagggctggtttac
gatgagaagatgatggagcatgtgaacctgtgggacagacatcaccctgaacagcctcag
aggacctttaagatcttctctagacaccagcagctgggattggttgatcgttgccatcgg
atacaggcacgcctggcaacagaggaggagctggccatgtgtcacagtttgcggcatatc
gagcagatgaaggcgacgacggagatgaagccccgagaccttcacaagctaggagacaac
ttcacctccatcttcctctgtaaccagagcttccagtgcgcccagatggctgctggaagc
tgcttcaatgctgtggacagcatcctgactggccaggtgaggaactgcgtggccatcgtc
cgtcctccgggtcaccacgccgaaagagatgttccctgcggtttctgcctcttcaacacg
gcagcactcactgctcgctacgctcagaaaaactcccaggattctcagctgcggatcctg
atcctcgactgggacgttcaccacggcaacgggactcagcacatgtttgaagatgatgat
agcgttctttacatctcactccatcgctatgacaacgggacgttcttcccgttctctgaa
gacgctgccccttatagggtgggcgtggccaagggttcaggttacaatgtgaacgtggcg
tggagcggaggacgaatgggcgactcagactacctagcagcctttcatcatgtcgtcatg
ccgattgccactgaatttaaccctggtctggttctggtgtccgctgggtttgacgcagct
cgaggagatcctctgggaggatataacgtgtctccagaaggatacgcccacctcacacac
atgatgatgtcactggctgggggacgagtcctcgtcatcctggagggaggttataacctg
acatcaatctctgactccatggcgatgtgcaccagcgtgttgctaggagaccctcctcca
tcgctggtgacgcccctcccccctcctcatcactgcgccgtggcaacaatcagggaagtt
atccgacagcacctcccctactggcggtccttgaggatccaggttccagagtctgtgcag
gaagccgtgccctccccaaagcatcgtgggaaacgtagctctcaaggcaggaagtcagaa
aagccaccctgtgttggacaggtctctatgacggagcacggtctggagcagctcatgcag
ggattggccagtctagacatccataaaacctctgccaatcaggacaaggtcaagccttcc
tccaccccaccagaagcggcagcagcgaaggtggaaggtgacatgaagactgagaacagc
caatcagcagagagcatgcagcctcagagcgtgacgacagcagcgaaggcggaccaagca
gggaccgaccctgaagcaagggcggagtcaggaagaggggaggagcctttggacggctca
ggggcggagccagaggaagagggagcctgtggttggtccaagcctcaggtgtctctggag
atgacatgcagcgctgaaatgggcggagacactctgtacgtggtggaccccctgccctgg
tgtcctcacctggatgctgtcaagcctctcccacattctggcatagacgtcttccagccg
tgcggcgactgcggttccgacgccgagaactggatttgcctgacctgctaccaggtgtgc
tgcggtcgctacgtcaatgagcacatggtgacacatggcgccacgttggaacacccgatg
gtcctgagcttctcggatctgtccgtatggtgctacctgtgcgagtcctacgtccaccac
caggttctgttcgaggccaaaaacgctgctcacttcgccaagtttggagaggaggttcca
ccgtggagctga
DBGET
integrated database retrieval system
