Cyprinodon tularosa (White Sands pupfish): 119792192
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Entry
119792192 CDS
T07496
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119792192 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ctul03041
]
119792192 (dhx38)
Enzymes [BR:
ctul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119792192 (dhx38)
Spliceosome [BR:
ctul03041
]
Complex C
Other components
Step II factors
119792192 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_16
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
119792192
NCBI-ProteinID:
XP_038154641
LinkDB
All DBs
Position
Unknown
AA seq
1254 aa
AA seq
DB search
MDDDDVSMHRLEGTEPQAQVGGLIVKKKSAASEPHVFRAPTPRTSLLGLDLLAAQKRKER
EIREQEESNGDEKNRKRSKVSSYKDWEENKSDSGSDEEDDDTSTATKKESRKYRVTGSET
PSNPGGVSEEFKRRHEQREKDRREHGVYASSKEDKNKERERSRDKGREQRSERDDRDSRH
SRGNSSSRSERGERSERSERSQRDGWSERISRGTKRDEPATPQQRPRDAFTPSRSNWDED
DSGYGSSRHSQWESPSPAPSQRESDRSERSYRTGRESERRDRSVRGRYTDNTPLPTPSYK
YNEWANDRKHLGSTPRLSQGKGKKEEGGMMFDDQEEKEQWEEDQKQADRDWYMMDEGYDE
FHNPFTSTSDEYVKKREQILQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQRLEVDE
DFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPIVPVKDPTSDMAIISRKGSQLVRKHR
EQKERKKAQHKHWELAGTKLGDIMGIKKKEEEEPGGKVVGEDGKVDYRADQKFAEHMKEK
SEASSDFAKKKSILEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQLTQYLHED
GYTRYGMVGCTQPRRVAAMSVAKRVSEEIGTNLGEEVGYAIRFEDCTSEKTMIKYMTDGI
LLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVARRTDLKLIVTSATMDSDKF
AAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMVGDILIFMPGQED
IEVTSDQIVERLEDLENAPPLAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSL
TVDGIMFVVDSGYCKLKVFNPRIGMDALQVYPISQANANQRSGRAGRTGPGQCYRLYTQS
AYKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGA
LDNTGALTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFYRPKGREE
ESDQVREKFSVPESDHLTYLNVYMQWKNNNYSSIWCNDHFIHTKAMRKVREVRSQLKDIM
VQQKMNLISCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLFGMGY
TPDYIIYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGKSRQENRRRAKEELTNM
EQEMVLAQEQLRARREEQERKSNTSSVRAVKICTPGRKEEAPMTPRRTPARFGL
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgatgacgtatccatgcataggcttgaagggacagaacctcaggctcaagtt
ggaggtctgatagtaaagaaaaagagtgctgcttcagagcctcatgttttccgggcacct
acaccacgcacctctctgctgggcttggacttgctggctgctcagaaaagaaaggagcgt
gagattagagaacaagaagagtctaatggggatgaaaaaaatagaaagaggtcaaaagtt
tcctcctacaaagactgggaagaaaataaaagtgactctggatctgatgaggaggatgat
gatacaagtacagccactaaaaaggagagtaggaagtaccgcgtcacaggctctgagact
ccctccaacccaggaggtgtcagcgaagagtttaaacgccgacatgagcagcgagagaaa
gaccggcgtgaacatggagtttacgcctcctctaaggaggacaagaacaaagagagagaa
aggagcagagataaaggaagggagcaacggagtgagagagatgatcgagacagcagacac
agtcggggcaacagcagcagccgatcggagcgcggggaacgcagtgagaggagcgagcgc
tcccagcgagatggctggtctgaacgcatcagcagagggactaagagagatgaacctgca
acaccccagcaacgtccccgagacgcctttacaccttcccgatcaaactgggatgaagac
gacagcggctatgggagttcaaggcactcccagtgggagtctccatcccctgccccatct
caaagagagtcagatcggtctgaaagaagctatcggacagggagagagagtgagaggagg
gatagatctgtcagagggcgttacactgacaacacacccctgcccaccccctcctacaaa
tacaatgagtgggccaatgatagaaagcatttaggctccactccacgtttgtcacaagga
aaaggcaaaaaagaagagggaggaatgatgtttgatgatcaagaagagaaagaacagtgg
gaggaggaccaaaagcaagccgacagagactggtacatgatggacgaaggctacgatgag
ttccacaaccctttcacctcgacctctgacgaatatgtgaagaagagagagcagatcctt
cagaagcagactcagaaaagaatatctgcacagaagcggcaaatcaacgaggataatgaa
cgttgggagaccaaccgtatgttgaccagtggtgtggtgcaaaggcttgaggtggatgaa
gactttgaggaagacaatgcagctaaagtccatctgctggttcacaatctggttcctcct
ttcctggatggaaggatcgtcttcactaagcagccagaacccattgttcctgtgaaggac
cccacctctgacatggccattatctctcgaaagggaagccagcttgttcgcaaacatcgt
gagcaaaaggaacgcaagaaggcacagcacaaacactgggaattggcaggcaccaagtta
ggtgacataatgggcatcaagaagaaagaggaggaagaacctggcggcaaagtagtggga
gaagatggcaaagtggactacagggctgatcagaaatttgctgagcacatgaaggagaag
agtgaagccagcagtgactttgctaagaagaagagcatcctggagcagagacagtacttg
cccatctttgctgttaggcagcaacttctaaacatcataagggacaacagcatagtcatt
gttgtaggagaaaccgggagcggtaagaccacccagctgacccagtacctccatgaggat
ggttacactcgctacgggatggtgggttgtactcagccccgaagagtggcagccatgagt
gtggccaaaagagtcagcgaggagattggcaccaacctcggagaggaggtcggatacgca
atccgttttgaggactgcacttcagagaaaaccatgataaagtacatgactgatggtatt
ctgctcagggagtctctgagggagtcagacctggaccactacagtgctgttatcatggac
gaagctcatgagcgttccctcaatacagatgttctgttcgggctgctacgggaggttgta
gctcgacggactgacctaaagctcattgtgacctctgctactatggactcggacaaattt
gcagccttttttggcaatgtgcctattttccacattccaggaaggacatttccagtagac
atattgttcagcaagaccccacaagaggattacgtggaggcagcagtgaagcaggcactc
cagatccacctcagtgggatggtgggagacattttgatctttatgcctggacaggaagat
attgaggtaacatcagatcagattgtagagcgtttggaagacttggagaacgctcctcct
ctggctgtgctgcccatttactcacaacttccatctgatctccaagctaagatcttccag
aaggctccagatggtgtaagaaaatgtattgttgccacaaacatcgcagagacatccctc
accgtggatgggatcatgtttgttgtggattcagggtattgtaaacttaaggttttcaat
cctcgcattggtatggatgctctccaggtttatcccatcagtcaggcaaatgccaaccag
cgatctggcagagcaggacgtacaggaccaggccagtgttacaggctttacactcagagt
gcttataagaatgagatgctaaccaccaccataccagagatccagagaacgaacctggcc
aatgtagtcctgctgctgaaatctctgggtgttcaggacctgctcctcttccacttcatg
gatccaccacctgaggacaacatgctcaactccatgtaccagctctggatcctgggagct
ctggacaacacaggtgctctgaccccaactgggcgtctgatggtggagtttccactcgac
cccgccctctccaagatgctgatagtgtcctgtgacatggggtgcagtgcagacattctc
atcattgtctccatgctgtcagtgccagccattttctaccgacctaagggtcgtgaggag
gaaagcgaccaggtgagggagaagttctcagttcctgagagcgaccaccttacatacctt
aatgtctacatgcagtggaaaaacaacaactattccagcatttggtgcaacgatcacttc
atccacaccaaggctatgcgcaaggtgcgtgaggtccgctcccagttaaaggatatcatg
gttcaacagaagatgaacctcatttcctgtggctcagactgggacatcattagaaagtgt
atctgtgctgcttacttccaccaggcagccaagcttaagggcattggtgaatatgtgaac
gtgaggacaggcatgccatgtcacctccatccaaccagctccctcttcggtatgggctac
acgccagactacatcatctaccacgagcttgtaatgaccacaaaggagtacatgcagtgt
gttactgctgtggatggagaatggttagcagagctcggacccatgttttacagcatcaaa
catgcaggaaaaagcagacaggagaatcgtcggcgagccaaggaggagctgaccaacatg
gagcaggagatggtcctagctcaggagcagctgagagcacgtcgagaggagcaggagagg
aagagcaacaccagcagtgtgagggcagtgaaaatctgcaccccaggaaggaaagaggag
gcccccatgacacccagacgcaccccggctcgcttcggattgtga
DBGET
integrated database retrieval system
