Cyprinodon tularosa (White Sands pupfish): 119792676
Help
Entry
119792676 CDS
T07496
Symbol
zswim8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ctul04121
]
119792676 (zswim8)
Ubiquitin system [BR:
ctul04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
119792676 (zswim8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Ribosomal_L24e
Motif
Other DBs
NCBI-GeneID:
119792676
NCBI-ProteinID:
XP_038155341
LinkDB
All DBs
Position
Unknown
AA seq
1936 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVTPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAFWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRIRAVKDPLQIGFHLSATVVSSQSGQSKAAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTYEQIISWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTMSPARRLELASQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWEAAY
PLEGITYCSADKKISTFCWPRAMQLQRGAKAAAGELSDIGAGNKAEGLVVDYKGRGSSHF
SQQEVAVRPKETILSKRKGLSLSGGGGMLVRLGGNVSLSLEDGGGKCMYKGAASSSGGKL
KLMQGGGKVPSTGGTGGSGGSGSSKHANAKRRTSSEDSSLEPDLADLSLDDSCNLALGAE
ACNTFEFLPTSSEVLPSASPLLRDSSKYSRGSGGSKSFDVKHAGHVPAAESAPGSFTSKE
NMDLAADATERDVEADANPGHGIDACNSEQPVSSTVSGGPEAFAEAEPSGAAAGAAIQGV
EAVGAASEGEALAEDDYQAYYLSAASEEGAEKQLADSHQEEEPDIFAGIKPLEQAGRMEV
LFACAEALYAHGYSNEACQLAVELARDLLENPPDLKVEQPQTKGKKSKVSTSRQTQVATN
TLSKAAFLLTVLSERLELHNLAFSTGMFSLELQRPPASTKALEVKLAYQESEVVALLKKI
PLGLVEMSAIRERAEQLRDGNLCDYRPVLPLMLASFIFDVLCTPVVSPTGSRPPSRNRNN
EMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRRVKGDLALALMITYKDDQSKLKKI
LDKLLDRESQTHKPQTLSSFYSSKPATASQRSPSKHTAGNHGGMGGAAGGANKHALSSSS
SNTVAASSSSSSSTVALAGEESQPTQVELSLLQNSTAGESTAETKEHAADGGQLSSEHQN
ETAAFKLEATVPSRLALGGRCGYSQRCWGSPVRQKKKHTGMASIDSSAPETTSDSSPTLS
RRPLRGSWAAASWGRGQDSDSISSSSSDSLGSSSSSGSRRAGGGGARAKSTDTSRYKGRR
LECHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTQPSASGGHQGPHRNLHLCA
FEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALNILVECWDGHLTPPEVAS
LADRASRARDLNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNVMLEKACMAVEE
AAKGGGVYPEVLFEVAHQWYWLYEQSVGGGTTQQREPPSRCGANGSSGRRAPDTACVVLD
GGANMESSGVGAVTAAVTAAAIVPVISVGSTIYQSHAIPGQAMSHPHSQGLHPYTTIQAH
LPSVCTPQYLGHPLQHVPRPAVFPVTGASYPQGMHPAFIGAQYPFSMAPGPQPTLSAAAV
TFPAVPVPSMTQIAVHPYHTETGMPLGTTVAVGSVHSGPTIQAIQGASLPAVSSQPAPLV
SAPFTAEEEQHSQPISQQGLHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTEDVK
WLLGLAARLGVNYVYQFCVGAAKGVLSPFVLQEIIMEALQRLNPAHIHAHLRTPAFHQLV
QRCQQAYLQYIHHRLIHLTPADYDDFVNIIRSARGAFCLTPVGMMQFNDVLQNLKRGKQT
KELWQRISLEMATFSP
NT seq
5811 nt
NT seq
+upstream
nt +downstream
nt
atggaactaatgtttgctgagtgggaggacggggagaggttctccttcgaggattcggac
aggtttgaggaggactccctgtgctccttcatctccgaggctgagagcctctgccagaac
tggagaggatggaggaaacagtctgctgggcccaactccccaaccgtcaagattaaagat
ggccaggtgactcccctggtggagttgtcagcgaagcaggtagcctttcacatccctttc
gaggtggtggagaaggtttacccgccggttccagagcagctgcagctccgcatcgccttc
tggagcttccctgagaatgaggaagacatcaggttgtattcctgcctggctaatgggagt
ccagatgaattccagcgtggagagcagctgtacaggatcagagccgtcaaagaccccctt
cagattggcttccatctcagtgctacagtcgtctccagtcagtcgggtcagtctaaagca
gcttacaacgtggcagtcatgttcgaccgctgccgcatcacttcctgcagctgcacctgt
ggtgctggggcaaaatggtgcgcccatgtggtggctctctgcctcttccgaattcacaat
gcatcagcagtttgtctgagggctccagtttctgagtctttatccaggctgcagagggac
cagctccaaaagtttgcccagtacctcatcagtgaattgcctcaacagatcctgcccaca
gcccagaggctgttagatgagctcctgtcttctcagtccacagccatcaacactgtgtgt
ggagctccagatccaacggcgggaccttcagcatctgatcagagcacctggtatctggat
gagtccaccctcagcgataacatcaaaaagaccttgcacaagttctgtgggccttctcct
gtggtcttcagtgatgtgaactccatgtacctgtcctccaccgagccaccggcagctgct
gagtgggcctgcttgctgcgccctcttagggggcgggagcccgaaggcatctggaacctt
ctgtccatcgtcagggaaatgtttaagaggcgagacagcaacgcggccccgctgctggag
atcctcactgagcagtgccttacctacgagcagatcatcagctggtggtacagcgtcaga
acctcggcgtcccacagcagcgccagcggccacaccgggcgcagcaacggccagtctgag
gtggcggctcacgcctgcgccagcatgtgcgacgagatggtagttttgtggagactggcc
gtactcgaccccactatgagccccgccaggcggctggaactggcgagccagctgaagcag
tggcatctgaaggtgatcgagatcgtcaaacgaggacaacatcgaaaatccctggataaa
ctttttcagggcttcaaacccgccgtggaatcctgctacttcaactgggaggcggcctat
ccgctggaagggatcacatactgcagcgcagataagaagatcagcaccttctgctggccc
agggctatgcagctccagaggggggctaaagccgcagcaggagagctgtctgacatcgga
gcagggaacaaagctgaaggcctggtggtggactataaaggaagggggagtagccatttt
tcccagcaggaggtggctgtgcggccgaaggagacgatcctgagcaaacggaagggtttg
tcactgagtggaggaggagggatgctggtccgcctgggagggaacgtctctctgtctttg
gaagacggtggagggaagtgcatgtataaaggggcagcttcctcctctgggggcaaactg
aagctgatgcagggaggggggaaggttccgtccacaggaggaactggaggaagcggaggc
agcggaagcagcaagcatgctaacgctaaacggagaaccagcagcgaggacagctctctg
gagccggaccttgccgaccttagtctggacgacagctgcaatctggctctgggggcagag
gcctgcaacacgtttgagtttctgcccacatcatcagaggttctcccctctgcgagcccg
ctgctccgagactcgtctaaatacagcagaggcagcggggggagcaagagttttgatgtg
aagcatgccggtcacgtcccagctgcagagtctgctccgggctcttttacctccaaggaa
aacatggacttggctgcggacgccacggaacgggatgtggaggcggacgccaatcctggc
cacgggattgacgcatgtaacagcgagcagcctgtcagctccacagtgtccgggggccct
gaagccttcgccgaggccgagcccagtggagcagcagctggagcagccatccagggtgtg
gaagctgtcggcgcagcttctgaaggagaagctctggcggaagatgactaccaggcgtac
tacctcagcgccgcatctgaggagggagcagagaaacagctggccgacagccaccaggag
gaggaaccagacatctttgctggaattaaaccactggaacaggcaggacgcatggaggtg
ctgtttgcctgtgccgaagcgctctatgctcatggctatagcaacgaggcctgtcagctg
gctgtggagctcgccagagacctgttggagaaccctcctgaccttaaggtggagcaacct
caaactaaggggaagaaaagcaaggtgtcgaccagccgtcagactcaggtggccaccaac
acgctgtccaaagctgccttcctgctcactgttctcagcgagaggctggagctccacaat
ctggccttcagcactgggatgttctccctggagctacagaggccgcctgcgtccactaaa
gccctggaggtgaagttggcctaccaggagtcggaggtggtggcgctgttgaagaagatc
cccctaggcctggtggagatgtcggccatcagagagcgggccgagcagctccgggacgga
aacctctgtgactacagacctgtgctgcctctgatgctggccagtttcatatttgatgtc
ctctgcaccccagttgtgtctcccactggttcccgtccgcccagtcgaaaccggaacaac
gagatgcctggagacgaggagctgggctttgaggcggctgtagctgcgctcggcatgaag
acgaccgtcagtgaggcagagcatcctctgctctgtgagggaacccgtcgggttaaaggg
gacctggctttagctctgatgatcacctacaaagacgaccagagcaaactcaagaagatc
ctggataaattgttggacagggaaagccagacccacaaacctcagactctgagctcattc
tactctagcaagccagctacggccagtcagcggagcccgtccaaacataccgccgggaac
cacggtgggatgggaggggctgccggtggcgccaacaaacacgccctatcgtcatcctca
tcaaacaccgtggccgcgtcatcttccagctcttcttccactgtggctctggccggggag
gagtcacagccgacacaggtggagcttagcctgctgcagaacagcactgccggcgagagc
accgcggagaccaaggagcatgctgcagatggaggccagttatcaagtgagcatcagaat
gagacggcagcctttaagctagaggccactgttcccagtcgactggcactaggggggcgc
tgcggatacagccaacgctgctggggctcacctgtccgccaaaagaagaagcacaccggc
atggcgagcatcgacagcagcgctccggagaccacttcggacagctcccccactctcagt
cgaaggcccctccgcggcagctgggcagcagcctcttgggggcggggccaagacagcgac
agcatcagcagttcatcgtccgattcgctgggctcctcctcctccagcgggtcccgtagg
gccggcggtggcggggccagagccaaaagcaccgacacaagcaggtataagggccgccgt
ctggagtgccacgccccccatgtacccaaccagccgtcggaagcggcggcccatttctac
tttgagctggctaagacggtgctgatcaaagctgggggtaactcctccacctccatcttc
acgcagccctcagccagcggaggtcaccaggggcctcacagaaacctgcatctctgcgcc
tttgagatcgggctgtacgcgctcggcctccacaatttcgtctcacccaactggctgtcg
aggacctattcctcccatgtgtcctggatcactggccaagctatggagatcggcagcgcc
gctctgaatattctggtggagtgctgggacggccacctcactccgccggaggtggcctcc
ctggcagaccgggcgtcacgggccagggacctgaacatggtccgggcggctgcagagctg
gccctcagctgcctgcctcatgcccacgccctcaaccccaacgaaatccagagagccttg
gttcagtgcaaagagcaggacaacgtgatgctggagaaggcctgcatggcagtggaagag
gcagccaagggtggaggcgtgtaccctgaggttctgttcgaggtggcccatcagtggtac
tggctttatgagcaatccgtgggcgggggcaccacccagcagcgggagccccccagccgc
tgcggggccaacgggagctctggtcggagggccccagataccgcttgcgtagtgctggac
ggcggagccaacatggagtcctcgggggtgggagcggtgacggcggccgtcacggcggca
gccatagtgcccgtcatctccgtgggctccaccatttaccagtcccacgccatccccggc
caggccatgtcccacccccacagccaagggctccacccgtacacaaccatccaggcccac
ctcccctccgtctgcaccccccagtacctaggacaccctctgcagcacgttcctcggccc
gccgtcttccccgtgactggggcttcgtatcctcaggggatgcatccagcttttattggt
gcccagtaccctttctccatggcccctggcccccaacccacgctgtctgctgcggctgtc
accttcccagctgttccggtaccgtccatgactcagattgccgtccacccctaccacacc
gagacgggcatgcccctgggaaccactgtggcagtgggcagcgtccactctggccccacc
attcaggccatacagggggcctctctacctgcagtgtcctcccagcccgctccgttggtg
agcgcccccttcacagcagaagaggagcagcacagccagccaatcagccagcagggcctg
cactaccttcattcggcctacagagttggtatgctggcgctggagatgctgggcaggaga
gctcataatgaccatcccaacaacttctccagaagtcctccttacacagaggatgtcaag
tggctgctgggactggctgcaaggctaggagtcaactatgtgtaccagttctgtgttgga
gcagccaaaggagtactgagtccattcgtcctgcaggagatcatcatggaggctctgcag
aggctgaatcctgctcacatccacgcccacctccgaacacccgctttccaccagctggtg
cagcgctgccaacaggcctacctacagtatatccatcaccggctcatccatctgaccccc
gctgactacgacgacttcgtcaacatcatccgcagcgcccggggggctttctgcctcacg
ccagtaggaatgatgcagttcaacgacgttctgcagaatctgaaacgaggcaagcagact
aaggagctgtggcagcgcatttctctggagatggcaacgttctccccgtaa
DBGET
integrated database retrieval system
