Cyprinodon tularosa (White Sands pupfish): 119793297
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Entry
119793297 CDS
T07496
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
119793297 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ctul03036
]
119793297 (chd8)
Chromosome and associated proteins [BR:
ctul03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
119793297 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
HDA2-3
HTH_CHD1_Hrp3
MUN
Motif
Other DBs
NCBI-GeneID:
119793297
NCBI-ProteinID:
XP_038156324
LinkDB
All DBs
Position
Unknown
AA seq
2610 aa
AA seq
DB search
MADPIMDLFEDTPLFNLDGLPDDSFSQGSSDPVEEALKLALGQAVPTGEPESTPDLAVSS
SLGVPVATPVIPDPAPLSVPTQQPVSVGSAQTVSVAPVVEAGAFMTSAPVPAPAESVPQI
QAQTTIPVASNPSGVSSSTVLLSSPLTVSSSPAITTTATTQQLTQITHQLTPQQLAAITQ
QAGGKIVILKGPQGQAQVLQAVSGTTGQTGGKVIRLLSGTPLKPGMSILQGGTILNQASP
GQTQVKVGAAGVQRLLQSANGPVKQVLLTSMPQQTQGQPVQVQMAQGQTTVQVQPQTQTA
QIQVQPQGQSTQLQVQPQAQAVQIQVQPQAQAAPAQVQTQGQVQLQPAMQGQTQGGEAKR
ITLVLQQPSQTGSTTPAVSAQQQVTAGGQQQQTQAPARLVLGQLPGGKLVLQGSQLAALT
QARAAGQAGGQPKVLTIQLQVQQQPNQQGVVKYQLVSGAGGTGGPQMLQISQGQGGQRVA
VPLKMLLQPQTSSATSSGGTVSVVKVINPSTAAPSATTTTPSQAIRITKAPGEPAAVRRV
EILCKQEKANRIVAEAIARAKARGEKNLPRVLNQDELPSTQTSPEMGGTLTLVSPAKKKS
SGGGGSKKKSLVSGGPIPKIIVGTDKKGKVVKISGGTIAVSGGTVIPGAGNKSKSKTKAN
TITLVGAKKRKRNASSDISDGELSPPSPVPMEDDMIMKRRSNRVVKRKKYTEDLDIKITD
DEDEQEDVDVTTTAAAVASISGGAAAQLKQEVELDGDGLPSMQFFVENPSEEDAAIVDKV
LSMRITKKEVSPGQYTNIEEFFVKYKNYSYLHCEWATLDQLEKDKRIHQKIKRFKTKHAQ
MRHLFQEEEEPFNPDYVEVDRILDVSHSVDKDNGEPVIYYLVKWCSLPYEDATWELKEDV
DEGKVEEFGKLLNRQPRLKKMVRPSASAWKKLEETREYKNGNTLREYQLEGVNWLLFNWY
NRQNCILADEMGLGKTIQSITLLSEIYAAGVQGPFLVIAPLSTITNWEREFSTWTNMNAI
VYHGSLASRQMIQQYEMYCKDDKGHLIPGAYKFDALITTFEMVLSDCPELREISWRCVII
DEAHRLKNRNCKLLDSLKMLDLEHKVLLTGTPLQNTVEELFSLLHFLEPAQFPSEIEFLR
EFGDLKTEEQVQKLQSILKPMMLRRLKEDVEKNLAPKQETIIEVELTDIQKKYYRAILER
NFSFLSLGANSNSNVPNLLNTMMELRKCCNHPYLINGAEEKIVTELREKYDPLAPDFHLQ
ALIRSAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLINKRYLYERIDGRVRGN
LRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRI
GQSKAVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSMSGNKDSNVNGLQQFSKKEIED
LLRKGAYAAIMDENDEGSRFCEEDIDQILQRRATTITIESEGKGSTFSKASFVASENRTD
IALDDPEFWQKWAKKADIDMDTINRKNTLVIDTPRIRKQTRQYSSLRGEGGDLSDLDSDD
EYPPANSRHSRSSRRSDRHSGGGYGRTDCFRVEKHLLVYGWGRWRDILAHARCKRRLSER
DVETICRVILVFCLMHYRGDENIKSFIWELITPPENGREPQTLLNHSGLSIPVPRGRKGK
RVKAQSTFDVQKVEWIRKYNPDTLLLDDSYRKHLKHQCNKVLLRVRMLYYLKQEVIGDHA
DSVLKGADIRDVDIWMPEMEQQEVPAAWWDSDADRSLLAGVFKHGYEMYTTMRADPCLCF
VERVGRPDDKAIDAEQHTGDTELGDDADFDKFSEDPEFKPASRVSKDLFDEPDSMNVDDE
ISVEDKTVPTVTESSTSQSGVCEWPSSSSLTARLRRLITAYQRSYRQEQLKMEAEAKGDR
RRRRCEQASKLKEIARQERQQRWTRREESDFYRVVSTFGVEKIKKEPGISEEGEVEFDWN
RFRTFARLDKKTDESLSRYFRSFVAMCRRVCHLRPGRGEDPSELTQTVAPITEERASRTL
YRISLLRRLRERVLPHPSLEERLLLAPRSSELPAWWTMPDHDRQLMLGAALHGVSRTELS
IFPDPQFTFSSARDEFIQNQQALPPPPPPPPPPIMTLGQPKVELDLTSMKREETDESARL
FGGGMSTELQSTPLSHHAVKVQGQDWSFKNSRERSEKAGRKGGGGSDSDSDSDSGSSSSE
RSGSSDDSGDSDEEVEGRGMKVGDVDEENSLLSMTPSQDSILPPEPIRVEWPKDRVLINR
LDNLCTLVLTGQWPSGRRYIPEAQLNPSSELLGEEMAYPRVIRKPISTPGGIGPEGEDGE
FTVKLLKEEGLKLTFSKQALMPNGSGGESSGRKKRKDQELSEFDELDSLERTPRRRDPPT
WLKENPDYEVEGDMLELLVNRSKRKRRRRANKPLTGTEKVKVINMLTGKKVGAAFSPMLQ
DLKEYLEENPNIAVSPEWSETVQKSGLLPESLFHRLLSENSEIPKKSHRRRHHHHHHHHH
HHYHTPDPTPEDPNLDGVEEETLVSDGAYMMDEEDLETPHHFLTSPDFDVKMGGGDSLSQ
GDYDSSDQEALLEDVILAPKDSDSSSSSED
NT seq
7833 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcccattatggacctctttgaggacactcccctatttaacttggacggcctc
ccagatgactccttctctcaggggtcatcggaccccgtggaagaagctctaaagttggct
ttggggcaagctgtcccaacaggcgagccggagtccactcctgacctcgccgtcagctcc
agtcttggcgttcctgtagcaactccagtcatcccagatcccgctccactttccgttcct
acccagcagccggtctcagtcggttctgcccagactgtgtctgtagctcctgtcgtggaa
gccggagccttcatgacctcagccccagttcctgccccagctgagtctgtgccacagatc
caggcccagacaaccatccctgttgccagcaaccccagtggggtttccagtagcaccgtc
ttgctgagctcacctttgaccgtttccagctccccagctattaccaccactgccaccacg
cagcagctgactcagataactcaccagctcactccccaacagttagctgccattacacag
caagctggagggaaaatcgtcattctcaaaggcccccagggtcaggcccaggtgctgcag
gccgtgtcaggaaccacgggccagacgggcgggaaggtcatccgtctgttgtctggtacc
cctctcaagcccggtatgtccatactgcaaggaggtaccatcttaaatcaggctagccca
ggacaaacccaagtcaaggtgggtgctgcaggggtgcagcgtctgctgcagtctgccaac
gggccggtcaaacaggtgttgctcacatccatgcctcagcagactcaaggtcagccggtt
caggtgcagatggctcaaggtcagactactgtccaggttcaacctcagacccagaccgct
cagatccaggtccagccccaaggacagtctacccagctccaggtccaaccccaggcccaa
gctgtccaaatccaggtccagcctcaggcccaggctgctccggcccaggtccaaacacag
ggtcaggtgcagctccaacctgccatgcagggccagacacagggaggtgaagccaagcgc
atcaccctggtcctccagcagccgtcgcagactggttctaccacaccagccgtcagtgct
caacagcaagtcacagcaggaggtcagcagcagcagacacaggctcctgccaggctggtt
ctgggtcagctccctggtggcaaactggtgctccagggaagccagctagcggcgctgacc
caggctcgggctgcaggtcaggctggagggcagcccaaggtcctcaccattcagctgcaa
gtacaacagcagcccaaccaacaaggagtcgttaagtaccagcttgtgtcaggagctggg
ggcaccggcggccctcagatgttgcagatatcccaaggccaaggaggacagagggtggct
gtacctctcaaaatgcttctgcagccacagacgagttcagccacatcttccggcggcacc
gtgtctgtggtgaaggtcatcaacccgtctaccgctgccccctctgctacaactaccact
ccctcgcaggccattcgaattaccaaggcccccggcgagcccgcggccgtccgacgggta
gagattctttgcaagcaggagaaggcaaatcgaatagtagctgaagccattgctcgggct
aaagcacggggagaaaagaacctgcccagggtcctgaatcaggacgagcttccatccaca
cagacttcaccggagatgggagggactcttaccttggtgtctcctgcaaagaaaaaaagc
agcggcggaggcggaagcaaaaagaaaagtctggtgtctggaggacccatacctaaaatc
attgttgggactgacaagaagggtaaagtggtaaagatatctggaggaactattgcagta
agcggtggaacagtgatacctggagctgggaacaaaagcaaaagcaagactaaagcaaac
actattaccctggtaggagcaaagaaaagaaagagaaacgcctcttcagacatttctgat
ggggagctgagcccaccctcacctgtccctatggaggatgacatgattatgaagagacgc
tccaaccgggtggtgaaaaggaagaaatacaccgaagacttggatattaaaataacagat
gatgaggacgagcaggaagatgtagacgtgaccacgacggcggcagcagttgcctcgatc
agcggaggggccgccgctcagctcaaacaggaagtggagcttgacggggacgggctgccc
agcatgcagttctttgtagaaaatcctagtgaagaagatgctgccattgtagataaagtc
ttgtccatgaggataaccaagaaagaggtgtcaccaggccagtataccaatattgaggaa
ttcttcgttaaatataaaaactattcctacttgcactgtgagtgggccactttggatcag
ttggagaaagataagcggatccatcaaaagatcaagaggttcaagaccaaacacgcacag
atgaggcatttattccaggaggaagaggagcccttcaacccagactacgtagaagtggac
aggatccttgacgtgtcccacagtgtggacaaagacaacggagagccggtcatctactac
ttagtgaagtggtgctctctaccctatgaggacgctacgtgggagctgaaggaggatgtt
gatgagggaaaggtggaagagtttggcaaactcctgaacagacaacctcgcctgaagaaa
atggtccgcccgtctgccagtgcatggaagaagctagaggagacccgagaatataagaac
ggcaacacactaagagagtatcagctggaaggagtcaactggcttctgtttaactggtac
aacaggcagaactgcatcctggcagatgaaatgggtctggggaagaccatccagtccata
acgctgctttcagagatttacgctgctggagtccaaggcccattcctggttattgccccg
ctctccaccatcactaactgggagagggagttctccacatggaccaacatgaatgccatc
gtttaccatggaagcctcgccagcagacagatgatccagcagtatgagatgtactgtaaa
gatgataagggacatttaattccaggagcgtacaagttcgacgctctcatcacaactttt
gaaatggtgctctctgactgcccagagctcagggagatctcatggcgctgtgtgatcatt
gacgaggctcaccgcctcaaaaacaggaactgcaagctgttggacagcttgaagatgctg
gacctggagcacaaagtgctgttgaccggcacccctctccagaacaccgtggaggaactc
tttagtcttctccacttcctggagccagctcagttcccctctgaaatcgagttccttcga
gagtttggagaccttaaaacggaggagcaggttcagaaactccagtctattttaaagcca
atgatgttgcgcagactcaaagaagatgttgagaagaacctagcacccaagcaggaaacc
atcattgaggttgagttgaccgacatccagaagaagtactaccgagccattctggagagg
aactttagtttccttagtctaggagccaacagtaacagcaacgtcccaaacctcctcaac
acaatgatggagctccgaaagtgctgcaaccacccctacctcattaacggtgcggaggag
aagattgtgacggagttacgagaaaagtacgaccccctggcccctgactttcatttgcag
gccctaattcgctccgcaggcaaactggtgctacttgataaactgctgcctcgcctcaag
gctggcggccacaaagtgctcatcttctctcagatggtgcgctgcttagacattctagag
gactacctcatcaacaagagatacctttatgagcgaatagatggcagagtgcgtgggaac
ctgcggcaggcagccatcgatcgcttcagcaaaccagactcggaccgcttcgtcttcctt
ctttgtacccgtgctggcggtctcggtatcaacctgacagctgctgacacctgcgtcata
tttgactctgactggaaccctcaaaacgacctgcaggctcaagcaagatgccatcgtatc
ggccagtcaaaggcggtcaaggtctaccgcctcatcaccaggaattcatacgagagggaa
atgctggacaaagcaagtctgaagcttggtttggatcgcgctgttctgcaaagcatgagc
ggcaacaaggatagtaacgtcaacgggctgcaacagttctctaagaaggaaattgaggac
cttcttcggaaaggagcttatgccgccatcatggatgaaaatgacgaaggaagccggttc
tgcgaggaagatatcgaccagatccttcaacgacgagccaccaccattactatcgagagc
gaaggcaaaggttctacattctccaaagccagcttcgtggcctctgagaaccgcactgac
atcgccctcgatgaccccgagttctggcagaagtgggctaagaaagcggatatcgacatg
gataccattaatcgaaagaacactcttgtgattgacactcccagaattcggaagcagacc
cgccagtactccagtttacgcggtgaaggaggcgacctgtccgatttggacagtgacgac
gagtatccgcccgccaattccagacactcgcggtcatctcgccgctccgaccgccacagt
gggggaggttacggtcgcaccgactgtttccgagtggagaaacacctgcttgtctacgga
tggggccgctggagggatatcttggctcacgccagatgtaaaaggcgtctgagtgaacgt
gatgtagaaaccatctgccgtgtcattctggtcttctgtctcatgcactatcgtggtgat
gagaacatcaagagcttcatctgggagctgattactccaccagaaaatggcagagaaccc
caaacactactgaaccactctggtctttctatcccggttccaagaggcaggaaaggtaag
agagtcaaggcccagagcaccttcgatgtccagaaggtggagtggatccgcaaatataac
cccgacactttgctgctggacgacagctaccgcaaacatctgaagcaccagtgcaacaaa
gtgttgctcagggtccgtatgctctactacctgaagcaggaggtcattggagaccatgca
gattctgtcctgaaaggagctgacattcgggatgttgatatctggatgccagagatggaa
cagcaggaggtacctgctgcctggtgggactcagacgcagaccgctcgctgctcgctggt
gtcttcaaacatggttatgagatgtacactaccatgcgtgccgatccctgcctctgtttc
gtggaaagagttggtcggcctgacgacaaggcaattgatgctgagcagcacaccggggac
accgagctgggagatgatgccgactttgataagttttcagaagatcccgagttcaagcca
gcatctagagtctccaaagatctttttgatgagcctgactctatgaacgtggacgatgag
atttcagtggaagacaagacggtaccaacggtaacagaaagctcaacgagtcagagtgga
gtgtgcgagtggccctcaagctcgtcgctaactgcacggttgaggcgactgatcacagcg
taccagcgcagctacagacaggagcagctgaagatggaagccgaggccaaaggcgaccgc
agacggaggcggtgcgaacaggccagcaagctaaaggaaatcgcacggcaggaacgacaa
caaaggtggacgcggagagaagagagtgatttctaccgtgtggtgtccacgtttggagta
gagaagattaagaaggagcccggcatttcagaggagggagaagtggagttcgactggaac
cgtttccgaactttcgcccgcctggataaaaaaaccgacgagagcctcagtcgatacttc
cgttcattcgtcgcaatgtgccgaagagtgtgccacctccgcccaggtcgtggtgaagat
ccttcagagctgactcaaactgtggctcccatcactgaagaacgtgcctcccgtactctg
taccgcatcagccttctgcgccgccttcgtgagcgagtcctccctcacccctccctggag
gagcgtctcctcttggccccacgcagctctgagctgcctgcttggtggaccatgcccgac
cacgatcggcagctaatgctcggcgccgcactgcacggcgtcagccgtactgagctttcc
atcttcccggacccgcagttcactttcagctcggctcgcgacgaattcatccagaaccag
caggctctaccgccccctcctcctcctccgcctccaccaatcatgacactcggccagccc
aaggtggagttggacttaacgagtatgaagcgggaggaaacagatgagagcgctcgactg
tttggggggggtatgagtactgagctgcagagcacacctttgagtcaccacgctgtcaaa
gtgcaaggtcaggactggagctttaagaacagcagggaacgatcggaaaaagcaggaagg
aaaggtggaggagggtccgactcggattcagattctgactcggggtcttcgtcctcggag
cgatccgggagcagcgatgacagcggagacagcgacgaggaggtagaaggaaggggtatg
aaggtgggagatgtggatgaagaaaatagcttactctccatgactccgtctcaggatagc
atacttccacctgaacctatccgagtcgagtggcccaaggaccgtgtgctgatcaaccgc
ctggataacctgtgcacccttgtgctgaccggccagtggccctcgggccgacgttacatt
cctgaagctcagctcaacccgagctcagagctgttgggagaggagatggcctaccccagg
gtcatccgtaaacccatcagcacaccggggggcatcgggccggagggggaagacggagag
ttcacagtcaaactcctcaaggaagaaggcctgaagctgacgttctccaagcaggcacta
atgcccaacgggtcagggggagagagcagcggacgaaagaagcggaaagaccaagagctg
tcagagtttgacgaactcgattcactggaacgtacccctcgaagaagggaccctcccacc
tggttgaaagagaatccagattatgaggtggaaggagacatgttggagctgctggttaac
aggagcaaaaggaagaggagacggcgagcaaataaacctctgacaggcactgagaaggtc
aaagtgatcaacatgctgacaggaaagaaggttggagctgctttctcgccgatgcttcag
gatctaaaggagtatctggaggagaatcctaatatcgccgtttcacccgagtggtctgaa
accgttcaaaaatctggtctgctgcctgaatccctcttccaccgcctgctgtcggagaat
tcagagattccaaagaaaagtcaccggcggcgtcaccaccaccatcaccaccaccaccac
catcattaccacactcctgaccccacgcctgaagaccctaacttggacggagtagaagaa
gagactctggtttccgacggagcctacatgatggacgaggaggacttggagacgccccat
cacttcctcaccagcccggactttgacgttaaaatggggggcggtgacagcctctctcaa
ggcgactacgacagctcggatcaagaagcgctactggaagatgtcatcctggcgccgaag
gactctgactcctcatcaagctcagaagactga
DBGET
integrated database retrieval system
