Cyprinodon tularosa (White Sands pupfish): 119793331
Help
Entry
119793331 CDS
T07496
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03008
Ribosome biogenesis in eukaryotes
ctul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
119793331 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
119793331 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctul03019
]
119793331 (xrn1)
03009 Ribosome biogenesis [BR:
ctul03009
]
119793331 (xrn1)
03016 Transfer RNA biogenesis [BR:
ctul03016
]
119793331 (xrn1)
03036 Chromosome and associated proteins [BR:
ctul03036
]
119793331 (xrn1)
Messenger RNA biogenesis [BR:
ctul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
119793331 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
119793331 (xrn1)
Ribosome biogenesis [BR:
ctul03009
]
Eukaryotic type
Pre-60S particles
RNases
119793331 (xrn1)
Transfer RNA biogenesis [BR:
ctul03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
119793331 (xrn1)
Chromosome and associated proteins [BR:
ctul03036
]
Eukaryotic type
Gene silencing
piRNA pathway
119793331 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
119793331
NCBI-ProteinID:
XP_038156393
LinkDB
All DBs
Position
Unknown
AA seq
1680 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHKIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALEKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKVSTDKLWQNVKVFLSGHETPGEGEHK
IMEFIRSENTKPNHDPNTRHCLYGLDADLIMLGLTSHEHNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSALKTHMGSAYDLERIIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYKTYISVLPSLGGYLNENGHLNLRNFEKYMEKLSEFDREHFSEVFVDLK
WFESKVGNKYLNESAGIAAEEEAASRTGAKAEKDSSTHLGALASSENVTEQEKGELADEE
EEEDEMFETEFRQYKRTYYMTKMGVDVVSDEFLAKQAKCYVEGIQWILHYYYHGVQSWSW
YYPYHYAPFLSDIRNISELELTFDLGKSFMPFQQLLAVLPAASKELLPESYRDLMTSPSS
PIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDETCLLAAMEPFSDKLTKEEKARNRHSECA
MYSYDPDMDFTYTSPLPQLFPNITHCHVREVQIPMDAWHVALDHVSKRVDRSALYFCGFP
TLHHIKHKFYKKKSGVVVFQQSSRGENMILDILPNQDGETICDHVAADVLGKSVFVNWPH
LEEARIIAVSDGETRFALDEPPGVQQVYDRPSSPPPTKVSCLSDKEQKEWVKDVQGITEH
FFKRKGIVVNETDVLLYGQMLTGRKYVPKANGVVELEKQWAKQVLPFAFQTVVKDIEAFY
SSLSSFKSLDELFPPTTTVFMVGNPYYGAMGEVQDSQDVIKEGRVRVVFNVPHEPQLEHL
IHNQHKYSVKYCPGYVLASHLGISSYLVSRFSGSIFIGRGSKRNPCGEQKANVGLNLKFN
KKNEEVPGYTKRTEKEWLYSAAVEELLAEYLDRFSEVFDAVSRNSHDDVFYEDDIWPGVD
QNGAERVAEITSWLKSHPVSSSSRASCDLQILDAAIVEKIEEAVEKSKVKKTTKKVRVTV
KPHLLFRPLEQQQGVVPDPEAEFRLFDRVVNIRESFTVPLGLRGTIIGIKGAEHEPEVLY
EVLFDEEFAGGLNIRCTSPRGYRLPPFALINLSHGTRLDHGFHKLTAVVKPQPATGGNLN
SHRLGGLNHSPRSPFVPTQHNKNAVASQGNKTPSKGPNHKPAKFKDEYSNVWQSLQQKTG
PPNKPPAHWHNNQVPASGIRVLKKNEDVNSFFPPKSTADKGTTEFEELIANLKIGSQQTP
PPPAPPAEPSNQQDGPLSPQSFAMKGTLVLKEMLKIDGAGTGSPTSQEAVNPAPPAGQQQ
NRRRSNKKLAAKINNPPGESVASSAPALAASVNSAPSSRVSELACFCVGLGMAPPDFSFI
RNRQGPVVCQVKLSNGLTVHGPQCQSENEAKENAAFFALQRLNSLGSGFPLPPHLYPGMA
PMQRPPMGAMPQVFNQQGGLLLPSQGYGPPPLWGLTLPPHQPLNQPFYGAPGTFPGAARP
QPGTSLPIGSHNQFIPLQVTKKRASANKKNHETREFYSAAHTVAKNQSQKQLPAQSQPQN
ESQNQSQSEEAKSNSSNPSPAVQHTHPRKSGPAAGHTPGSASKRRHRKLAVNFEAAKVTE
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccgaaattttaccgctggatttctgaacgctatccttgtctcagtgaagtt
gtcaaagaacacaagattccagaatttgacaatctttatctggacatgaatggcatcatc
caccagtgttctcacccaaatgacgaagacgtccactttcgtatctctgaagagaagatt
tttgcggatatctttcattacctggaggtcctgtttcggatcatcaagccacgcaaggtc
tttttcatggctgtggatggtgtggcaccaagggcaaagatgaaccaacagagagggcgc
agattcaggtcagccaaagaagcagaggagaagattaagaaagccttggagaaaggagag
gtgcttcctacagaagctcgcttcgactccaactgcatcactcctggcactgatttcatg
gcgagactgcaggagcagctcaagtactttgtccataataaggtgtcaactgacaagctg
tggcaaaatgtcaaagtcttcttgtcgggtcatgagacaccaggtgaaggagaacacaag
atcatggagtttattcgttctgagaacaccaaaccaaatcatgatcctaacacgcgacac
tgcctgtatggcctagatgctgacctgatcatgttgggattaaccagtcatgagcataat
ttctccctgcttagagaggaggtccgttttggagggaaaaaatcccagaaaaggataaca
gctccagaagagacgacatttcacctgcttcacctgtcactgatgagggagtacattgat
tacgagttttcagcgctgaagactcatatgggctctgcttatgacctggagcggataata
gacgactggatattaatgggcttccttgtaggaaatgatttcattcctcacctccctcat
cttcacattaatcatgatgctttgcctttgctgtacaaaacttacatcagcgtactgcca
agtctagggggttacctgaatgagaacggccatttaaacctcagaaactttgagaaatac
atggagaagctctctgagtttgaccgggagcactttagtgaggtgtttgtggacttgaag
tggttcgaaagtaaagtcggcaacaaatatctgaacgagtctgctggcatagcagccgag
gaggaagccgctagccgaactggtgcaaaggcagagaaggactcttccacccatcttggc
gccctggcatcatctgaaaatgtgactgaacaagaaaaaggagaactggcagatgaggag
gaggaagaggatgagatgtttgaaacagagttcagacaatacaaacgcacatattatatg
accaagatgggggtggatgttgtgtcagacgagtttctcgccaagcaagccaaatgttat
gtggaaggtatccagtggattcttcactactattatcatggagttcagtcatggagctgg
tactacccttatcactatgccccgttcctgtctgacatccgaaacatttcagaattagag
ctgacctttgacctgggaaaatccttcatgcctttccagcagctattggctgtcctgcct
gctgccagcaaggaactgctccctgaaagctacagggacttgatgaccagcccaagctcc
cccattattgaatactatcctcctgacttcaaaactgacctgaatggaaagcagcaggaa
tgggaagctgtggtgctcattcctttcatagatgagacatgccttctagcagctatggag
cctttcagtgacaagctgacgaaggaagaaaaggccaggaatcggcactcagagtgtgcc
atgtactcctacgaccccgacatggactttacatacacctcccccctgcctcagctgttt
ccaaacatcactcattgtcatgtcagggaagtccagatccccatggatgcttggcatgta
gcgttagaccacgtcagtaagcgtgttgaccgctcagctttgtacttctgtggtttcccc
actttgcaccacatcaaacacaagttttataagaagaagagtggagtggtggtgtttcag
cagagtagcagaggggagaacatgattctggacatccttcccaatcaagatggggaaacg
atatgtgatcatgttgctgcagacgttttggggaagtcagtatttgtcaactggccccat
ctagaggaagcacgcattattgcagtatcagatggagaaactaggtttgctttagatgaa
cctcctggggtccaacaagtgtacgaccggccttccagtcctcctcctactaaagtttcc
tgtttgtctgacaaagagcagaaggaatgggtgaaggatgtccaaggaatcactgaacat
ttcttcaagaggaaaggcatcgtagtaaatgagacagacgtgcttctttacggtcagatg
ctgacaggaagaaaatatgtccctaaagccaatggagtggtggaactggagaaacagtgg
gccaaacaggttcttcctttcgccttccagactgtggttaaggacatcgaggcattttac
tcatctctgtccagctttaagagtttggatgaactcttccctccaacaactacagtcttc
atggtgggaaacccttactacggtgccatgggagaggtccaagactctcaagatgtcatc
aaagagggccgggtccgggtagttttcaacgtacctcatgagccgcagctggaacacctg
atccacaatcagcataaatactcagtcaagtactgtccaggctacgtcctggcctctcac
ctcggcatcagcagctatctcgtctctcgcttctcaggaagcatcttcatcggcagaggc
tcaaagaggaatccctgtggggagcaaaaagctaatgttgggctgaaccttaagttcaac
aagaagaatgaggaggtacctgggtacaccaagagaaccgagaaggagtggctttactct
gctgctgttgaggagctgctagctgagtacctagacagattttctgaagtttttgatgca
gtgtccagaaacagtcatgatgatgtgttctatgaagatgacatctggccaggagtggat
cagaatggggcagagagggtggctgaaatcacctcctggttgaaaagtcatccggtcagc
tcctccagcagggcatcatgtgacctccagattctggatgctgccattgtggagaagatt
gaggaagccgtggaaaaatccaaggtgaagaaaaccaccaagaaagtccgagtgacagta
aagcctcatcttctgtttcggcccctggaacagcagcagggtgtggttccagatccagaa
gctgagtttcgtctgttcgatagagtcgtcaacatcagggagagcttcaccgttcctctg
ggactcagagggacaatcattggcattaaaggagcggagcatgaacctgaggttctctat
gaggtcctgtttgatgaggaatttgcaggaggtcttaacataaggtgtacatctcctcgt
gggtaccgcctccctcccttcgcactcattaacctctcccacggtactcgattggaccat
ggcttccacaaactcaccgctgttgtcaaacctcagcctgctactggtggcaacctcaac
tctcatcgtctgggaggcctaaaccactctcctcgttcaccttttgtccccacgcagcat
aacaagaatgctgtggcatcccagggtaacaaaactccatctaaaggccccaaccacaaa
ccagctaagtttaaagacgagtacagtaatgtttggcagtctctgcagcagaaaacgggt
cctcccaataaacctcctgcccattggcacaataatcaggtcccagctagtggcatcaga
gtgttgaagaaaaatgaagatgtcaactcctttttccccccaaagagcacagctgataag
ggcaccactgaatttgaggaactgattgcaaatttaaagataggcagccaacaaacgcca
ccaccccctgctcctccagcagaacccagcaaccaacaagatggtcctttgtctccacag
tcctttgcaatgaagggaacgctagttcttaaggagatgctaaagattgatggagctgga
acaggaagtcccacatcccaggaggcggtaaaccctgctccccctgctggccagcagcag
aacagaagacgatcaaataagaagctagctgctaaaataaacaacccacctggtgagtct
gtcgcatcatccgctccagctttagcagcttctgtcaactctgctccgagcagcagggtg
tctgagctggcctgtttctgcgtgggcttgggcatggcccctcctgacttcagcttcatt
cgcaaccgacaaggtccggtagtctgtcaggtgaagctgtccaatgggctaacagttcac
ggaccgcagtgtcaatcagaaaatgaagccaaggagaacgcagccttctttgccctccaa
agactgaactctctagggtcagggtttccactgcctcctcatctgtatccaggaatggct
ccgatgcagcgcccaccgatgggagccatgcctcaagtcttcaaccagcagggtggttta
ctgctgccttctcagggttacggcccccctcctctttggggattgacccttcctcctcac
caaccactcaaccagccgttctatggagcaccaggaaccttcccaggcgctgctcgtccc
cagcctggtacctctctacccattgggtcccacaaccagttcatcccgctacaggtgact
aaaaaacgagcatcggctaacaaaaagaaccacgaaaccagagagttttacagcgccgcc
cataccgttgccaagaaccaatcccaaaagcagctccctgcccagtcgcaacctcagaac
gaatcacagaaccagagccaatcagaggaagcgaaaagcaactcgtccaatcccagccca
gcagtccaacacacacatccccgaaagagcgggccggcagcaggccacacccctggctcc
gcctccaagaggaggcacaggaagttggctgttaactttgaggcagctaaagtaacagag
tga
DBGET
integrated database retrieval system
