Cyprinodon tularosa (White Sands pupfish): 119793415
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Entry
119793415 CDS
T07496
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119793415 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctul03032
]
119793415 (topbp1)
03400 DNA repair and recombination proteins [BR:
ctul03400
]
119793415 (topbp1)
DNA replication proteins [BR:
ctul03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
119793415 (topbp1)
DNA repair and recombination proteins [BR:
ctul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
119793415 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
119793415
NCBI-ProteinID:
XP_038156559
LinkDB
All DBs
Position
Unknown
AA seq
1503 aa
AA seq
DB search
MSTAVKQDFVVKFVEGKGSKPQHAVKAYKAILELQSEKFLKAIQEEEVLQMDKKDSSLFV
FSSFTTPAFLHCKKLGCRIVSPLVVLHCLQQQRCVPKAEKPVYNMAMADITISCTSLDKA
TRAEVMDLVQLMGGRVYCDLNVTVTHLIAGEVGSKKYLVAANLGKPILLPTWVKACWEKS
QDSLFRYTDLPVEDYLCPVLLGCNVCVTGLSGTERKEVQRLCEQHGAKYTGQLKMNECTH
LIVSEPTGQKYECARKWNVYCVSLHWLFDSIEKGFCQDESRYKVQRNASSTSRPHTSTPT
GTSKREDGSSLLGLSNISISTSVPVNDTALTNFTTSRLETPDPIDSVDLTVCPADDVLDG
CKLYLSGFPEKKLEKLRRLVNAAGGLRFNQPSEDLTHVVVREVDQELRKFLSTATHRPHV
VTVQWLLNCFSKGTLLPEEGYLHPECLPPASAAVSVPAHRLARPRSSVGPPVANPSTPRE
PITDEDLLSQYMDDEPTVVDMPPPAPENNDTKSFSVAAEPQPESWTPNHTRGPETDSLLQ
DGLFSGRSFLLVGFDSEAEAQLSILVKEQGGKVLMSRHRAVADFAVVPQLGCAVEATVDE
VVTDTWLAMCVEKESLLPLSSNPLFTPVPVREGYFPLTDCVLSVSQFTGAERESLVELAK
HLGASVQDYFVRLANQKKGMRANTHLVLQTPDGTKYQAAKKWGLPAVTMHWILESARTGK
RAAEERYLVDLPLSPEREEESFVSGSQQPAELHPARSSVEKPLLGPQSSKAVTPFDSGRV
QSKVACSLLNENPKENQNTPKQNQEGCRRKPAQKEPALQLDTPSRFLVRDHLFRPSFNFK
ETLRDLETPDGRSKPVESVETPLTDVINRNRRVALANSSGNKILEMQEVSASPQLAQETK
KEIPQKDSGPLSGAVICVGKKLIKMQSELNAIAASLGADFRWACDDTVTHYIYQGRVGDN
SREYKAVKERGLHVVSQYWLHACAEEQRHVPESLYPFTYNPKMSLNLSQIPSSSQRSPPL
TRTQLKEAAESRNNKSELVAAEGSTVGHPVEGEETSETPEKRDTLEMRESLQRQLQEIMS
ATKMTTGRRTSVRLARMGSGFTDSGPNTPEGGRVGRSGSRRTLEALRVSRETMMDVNTEP
SQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPLVAAPPPTAENGPHFKDSMTDSEL
VEMAACDVINQHMGQKVTSPPSEGPEEDMLTPKAPSIAFPLPKPLAAPEPQEKEEKKQPP
RFQLSSLSPQERIDYSHLIEELGGVVLDKQSFDPSCSHIIVGSPLRNEKYLAAMAAGKWI
LHRSYLEACRSVGHFIQEDDYEWGSSSILDALPSITSQQRRLALAAMRWRKALQGGSEHG
GAFSGWTVMLNIDQSRESGFRRLLQSGGAKVLPSPSPSLYRETTHLFADFSRLKPGDFRV
DVAEATAQGVTCLKPEYIADYLMQEPAPQIELYCLTAAAPEEAPGTKRKVEADTSRLKRS
RLN
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atgtctacagctgtaaagcaagactttgtggtgaagtttgtggaaggcaaaggctctaaa
ccacagcatgctgtcaaagcatataaggccattctggagctgcagtcagagaagttttta
aaagccatccaggaggaagaagtgttacagatggataagaaggacagctctctgtttgtt
ttcagtagcttcaccactccagctttcctgcactgcaaaaagcttggttgcagaatagtg
agtccactggtggttttgcactgcctgcagcaacagcgttgtgtcccaaaagcagaaaaa
ccagtgtataatatggcaatggctgatattaccatatcctgcacgagcctggataaagca
actcgggctgaggtgatggatttggtgcagctcatgggtgggcgggtctattgtgacctt
aatgtgactgtcacacacctgattgccggggaggtaggaagcaaaaaatacctggtggca
gccaacctgggaaaacccattttgctgcctacatgggtcaaagcctgctgggaaaaatca
caagatagccttttcaggtacacagacctgcccgttgaggactacctgtgccccgtcctg
cttggatgcaacgtctgtgtaacaggcctctccggcacggagcgcaaagaggtgcagagg
ctctgtgagcaacacggcgccaaatacaccggccagctcaaaatgaacgagtgcacacac
ctcattgttagtgaaccgacaggtcagaagtatgaatgtgccaggaagtggaacgtgtat
tgtgtgtctttgcactggctgtttgacagcatagagaagggcttctgtcaggatgagagc
aggtacaaggtgcagaggaatgcatcatcaaccagtcggcctcacacttcaactcctacg
ggcaccagcaagagagaagatggatcatctctcttgggtctgagcaacatttctatcagc
actagtgtgccggtaaacgacacggctctcaccaatttcaccaccagtcgattggagacg
cccgatcccatagacagcgtagacctcaccgtgtgccctgctgatgacgtgctggacggc
tgtaagttgtatctaagtggtttccccgagaagaagctggagaagttgcggcggcttgtt
aacgctgctggaggcctgcgcttcaaccagcctagtgaggatctcactcatgtagtcgta
agggaagtggaccaggagctccggaaatttctgtccacagcgactcacaggccgcatgtg
gtaacagtgcagtggctgctgaactgcttctccaaaggcaccctgctcccagaagaggga
tacctccatcctgaatgtcttcctccagcatccgctgctgtgtctgtcccagctcatcgc
ctggccagaccgcggtcatcagtcggcccacccgtcgccaaccccagcactcccagggaa
ccaataacagacgaggatcttctctcacaatacatggacgatgaacctacagtggtcgat
atgccaccaccagcaccagagaataacgacacaaagtccttcagtgtcgctgcagagcct
caacctgaatcctggacccccaaccacactagaggaccagagacagactcgctgctgcag
gacggcctgttttctgggagatctttcctgcttgttggctttgattcagaggcagaggct
cagctttcgattctggtgaaggagcaaggagggaaggtgttgatgagccgccatcgagcg
gtagcggattttgctgtggtccctcagctgggatgtgcagtggaggccaccgtggatgag
gtggtcacagatacatggctggccatgtgtgtggagaaggagtccctcctgccgctgtcc
tctaaccctttgttcacccctgttcctgtgagggagggatattttcctctcacagactgc
gtcctctcagtcagtcagtttactggggcagagagggagtctctggtggagctggccaag
catcttggagccagtgtccaggattactttgtgcgcctggccaaccagaagaaaggcatg
cgggccaacactcacctggtgctacagactcctgacggaacaaagtaccaggcagctaag
aagtgggggcttcctgctgtcaccatgcactggatactggagtctgctcgaacggggaag
agggcggcggaggagagatatttggtggatctccccttgtctccagagagagaagaagag
agctttgtcagtggatcccagcaaccagctgagctccacccagctcgatcttctgttgag
aagccgttgctgggtcctcagagcagcaaagcagtcaccccgtttgattctggccgcgtt
cagagcaaagtggcttgttctttgttgaatgagaatcccaaagaaaaccagaacactccg
aaacagaaccaggagggctgcagaaggaaaccagcccagaaggaacccgccctgcagctg
gacaccccctctcgattcctggtcagagaccatctcttcaggccgtcttttaacttcaag
gagacgctgagagatctggagacgcctgatggaagatcgaagcctgtagaaagcgtggag
actccactaactgatgtaatcaacaggaaccggagagttgctctggccaacagctcaggc
aacaagatcttagagatgcaggaggtctctgccagcccccagctggcacaggaaacaaaa
aaggagatcccacagaaagactctggacccttgagtggtgctgtgatctgtgtggggaag
aaactgatcaaaatgcaaagtgagctgaatgccatcgctgcctcgcttggagctgacttc
aggtgggcctgcgacgatacagtgacccactacatctaccagggtcgtgttggggataac
tcacgtgaatacaaagcagtgaaggagaggggactgcatgtggtctctcagtactggctg
cacgcttgtgctgaggagcagaggcacgtcccagagtctctgtatcctttcacctataac
ccaaagatgagtctgaacctgagccagatccccagcagctcccagaggtccccccctctc
acccgaacacaactcaaagaagcagctgaatccaggaacaacaagtctgagctagtcgct
gcagagggaagcacagtcggacatccggttgaaggagaagagacaagtgaaacaccagag
aaaagagacactttggaaatgagagagagcctgcaaagacagcttcaggagatcatgtcg
gccaccaagatgacaacgggaaggcggacttctgtcagactggccaggatgggatcaggg
ttcactgactcgggtccaaacacgcctgaagggggccgggttggacgcagtgggagcaga
cggaccctggaagctctgagggtgtctagagaaacgatgatggacgtaaacactgagcct
tcccagagtgagcagatcgtttgggatgatcctacagccagggaggagagagccaagctg
gctgataatctacagtggcctgggagtccgtctcagcattcagagcccctcgtggcggcc
ccccctcccactgcagaaaatggaccacacttcaaggactccatgacagactctgagctg
gtggagatggctgcttgtgatgttataaaccagcatatgggtcagaaggtcacatcgcct
ccgtcagagggtccagaggaggacatgcttactcctaaagctcccagcattgccttccct
ctccccaaaccactggcagcaccagagccacaggaaaaggaggagaaaaaacagccgccg
aggtttcagctgtcatccctcagccctcaggagcgcattgattacagtcatctcatagag
gagctcgggggcgttgtcctggacaagcagtcttttgaccccagctgctcccacatcatc
gtaggaagtccactgcgtaacgagaagtatttagccgccatggcagccggcaaatggatc
ctgcatcgctcgtacctggaggcctgtcgctcagtgggtcacttcattcaggaggacgac
tatgaatggggcagcagctcaatcctggatgctctgccctccatcacctctcagcagagg
aggttggccttagctgctatgcgctggagaaaagctctgcagggaggctcagaacacggc
ggagctttcagtggctggactgtgatgctgaacatcgaccagagcagagagtcaggcttc
aggcggttactgcagtctggtggagccaaggtgctgcccagtccctccccatcgctgtac
agagagaccacacacctgtttgcagatttcagtcgtctcaaacctggagacttcagagtg
gatgtagctgaggccacagcacaaggagtgacatgcttaaaacctgagtacattgcagat
tacctcatgcaggaaccagcgccacagatcgagctgtactgtctgactgcagctgctcct
gaagaagctcctggcactaaacggaaagtagaagcagacacttccaggctgaagaggagc
cgtctgaactaa
DBGET
integrated database retrieval system
