Cyprinodon tularosa (White Sands pupfish): 119795399
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Entry
119795399 CDS
T07496
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03030
DNA replication
ctul03420
Nucleotide excision repair
ctul03430
Mismatch repair
ctul03440
Homologous recombination
ctul03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119795399 (rpa1)
03420 Nucleotide excision repair
119795399 (rpa1)
03430 Mismatch repair
119795399 (rpa1)
03440 Homologous recombination
119795399 (rpa1)
03460 Fanconi anemia pathway
119795399 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ctul03000
]
119795399 (rpa1)
03032 DNA replication proteins [BR:
ctul03032
]
119795399 (rpa1)
03400 DNA repair and recombination proteins [BR:
ctul03400
]
119795399 (rpa1)
Transcription factors [BR:
ctul03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
119795399 (rpa1)
DNA replication proteins [BR:
ctul03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
119795399 (rpa1)
DNA repair and recombination proteins [BR:
ctul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
119795399 (rpa1)
MMR (mismatch excision repair)
119795399 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
119795399 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Pox_vIL-18BP
OB_MEIOB_N
CATSPERD-E_C
IBR
Motif
Other DBs
NCBI-GeneID:
119795399
NCBI-ProteinID:
XP_038159321
LinkDB
All DBs
Position
Unknown
AA seq
606 aa
AA seq
DB search
MANLSAGAIEALANGSGWNEAVLQLVNIRRLDGGNGPARFRVMMSDGRHTLSSFMLSTQL
NYMAEENILVPNCVCLLKRQVTNMLKDGRRVVIILEIQVLKPAEEVGGKIGDPTPYSDGQ
SKGQQPAPAPAPAPVPETRQPLQQQNRNEVNRNLNRDFMKKVPSALPDTPGGGSKVVPIA
SLNPYQSKWTIRARVTNKSSIRTWSNARGEGKLFSMEMVDESGEIRVTGFNQEVDKFFSL
IEVGKVYYVSRGSLKIANKQYTSVKNDYEMTLNGESTVIPCEDSCDVPMVQCDFVSIGDL
ENREKDAIVDVIGVCRSVDEVTKLTTKSNREVSKRTLSLMDMSGKLVNVTLWGEEAEKFD
GSGQPIVAIKGAKLSDYGGRSLSASFSSTMMINPDIPEAYKLRGWFDKEGHAMEGQSLTE
VRGGSGNYMENWKTLADVKSEHLGHGDKADYYSCIATIVFLRKENCLYQACPSQDCNKKV
IDQQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQL
KDSNESAFDEIFQHANFNTFVFRNRVKLETYNDESRIKATVMDVKPVDHREYSKRLIMNI
RKLGAK
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctttcagcgggggcgatagaggctttagcaaatggtagcggttggaacgag
gcagtgcttcagttggtgaatatacgcagacttgatggtggaaatgggcccgctcgcttt
agggtgatgatgagcgatggacgacacacactttcatcctttatgctctcaactcagcta
aactacatggctgaggaaaacattctggttccaaactgtgtgtgcctcctgaagaggcag
gtgacaaatatgctcaaagatggacgacgagtggtcatcattttagaaattcaggtcctg
aagcctgctgaagaggttggtggtaaaatcggagaccctacaccttactctgatggtcag
agtaaagggcagcagccagctccagccccagctccagctccggtgcctgaaaccagacag
ccactgcagcagcaaaatagaaatgaagtgaacaggaatttaaatcgagacttcatgaag
aaggttccctctgctttgcctgatactccagggggtggctccaaagttgtccccatcgct
agtctcaacccttaccagtccaagtggacaatccgtgctcgtgtaaccaacaagagctcc
attcgtacgtggagcaacgctcgcggcgaaggaaagctcttctcgatggagatggtagat
gagagcggagaaatccgtgtgactggttttaaccaagaagttgacaagtttttctctctg
atcgaggttggcaaggtctactatgtctccaggggctccctaaagatcgcaaacaagcag
tacacatcagtgaagaacgactatgaaatgactctcaatggagagtctaccgtcattccc
tgtgaggacagctgcgatgttcccatggtgcagtgtgactttgtctccattggggacttg
gaaaacagagaaaaggatgccattgttgatgtgattggagtatgtagaagtgtggacgag
gtgaccaaactcacaaccaagtccaaccgggaagtatctaagagaacattgagtctgatg
gacatgtctgggaagctggtgaacgtcacactgtggggagaggaagcagaaaagtttgac
ggctctggacagccgattgtagccataaaaggggcaaagctttcggactatggaggccgc
tcactttctgcatccttcagcagcaccatgatgataaacccagatatcccagaggcatac
aagctcagaggctggttcgacaaagaaggccatgccatggaggggcagtcgctgacggag
gtgagaggcggcagtggaaattacatggaaaactggaagacactggctgatgttaagtcg
gagcatcttggacacggcgacaaggctgactactattcctgcatagccaccatagttttt
ctgcgcaaggagaactgcctttatcaggcctgcccaagccaggactgcaacaaaaaagtg
attgaccaacagaatggcatgttccgctgtgagaagtgtgataaagagtttcccaacttc
aagtaccgcctcattctatctgccaacattgcggattatggcgacaaccagtgggtaact
tgcttccaggagagtgcagaggccattctgggccagaatgcagcttacttgggccagctc
aaggactctaatgaatcagcatttgatgagatctttcagcatgcaaatttcaacacgttc
gtcttccgcaacagagtgaagctggaaacgtataatgacgaatccaggatcaaagccaca
gtgatggacgtgaagcctgttgaccacagagagtacagcaagaggctgatcatgaacata
cggaaacttggcgccaagtag
DBGET
integrated database retrieval system
