Cyprinodon tularosa (White Sands pupfish): 119795863
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Entry
119795863 CDS
T07496
Symbol
pms1
Name
(RefSeq) LOW QUALITY PROTEIN: PMS1 protein homolog 1
KO
K10864
DNA mismatch repair protein PMS1
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctul03400
]
119795863 (pms1)
DNA repair and recombination proteins [BR:
ctul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
119795863 (pms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HMG_box_2
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
119795863
NCBI-ProteinID:
XP_038160025
LinkDB
All DBs
Position
Unknown
AA seq
882 aa
AA seq
DB search
MKQLPADTVRLLSSSQVITSVLNVVKELMENSLDAGASSIDVKLENFGLERTEVRDNGCG
IKAVDAPVMAVRHFTSKICSHEDLERLESYGFRGEALGSICAVAEVSVTTKTQEDDISTQ
YTLDHTGRVVSQRPSHLGQGTSVSVTKLFKNLPVRRQFYSSTKKCKEELKKVQDLLMAYA
LIKPELRLMLVHNKAVLWQKARAADLRSALVATLGSGAVANLLPCHQEQPEMVLDGFLPK
PGADLSSTSCSASEKTFIFINRRPVQQKEIMKLLRQHYCAQYAEDAARHRFPILLLSISV
SPSSLDVNLTPDKTQVLLDNKEAVLTALEALLVSLYGFRSSSAEQQLNHEAPPPPSARSE
ERRTRTSGFHEDAPTAEPKHGGGADPQAALQRQASSCSSSSSTADDWIINPPPSEICSGS
SLCGDETAAARPKPEQTGSEPEKPEEERETRKISAQDWSRGTALTDPVTGEPLRPVLVHR
PSGPGSPGPQEARSKKLINSVTEKGATLTAYDMISSRAMRAPPSPASLFEKEARSEVLRE
RPAASLQEVSAAVQERWRNLREEDRKTYEEKAKKKHDLHEQRTKLASDGGPQGPTERPKA
QSVKRKAPPSNQQLLDELFSAQPQKKTKTPPPKPSRPLLCSMAALRLRLQRLSSQSSAPP
RGLQLVNRLGSQSCWAVMAGRRLLLFNPYRVEEALLFKRLQENHVLPAAVLQNPLRLTDG
NLGGAEFETLCSMKKGAAELDGSVFFSDPRLLANGFRVRLPAGLPSAEKHLEVAAMADCV
PFLGVEDLREVLSAILHRKASRPQDCRPLKVTNYLKAEAVRLARQLPSSLRRGDVEELVG
RMERRLGGTEQTCIHGRRFFHHLVDVPSTDEEAEALLRPLEL
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagcttcctgcagacacggtgcggctgctgtccagctcccaagtcatcacctct
gtgttgaacgtggtgaaagaactgatggagaactctctggacgccggagcctccagcatc
gacgtcaaactggaaaactttggactggagcggaccgaggtccgggacaacggctgcggc
atcaaagcggtggacgctccggtcatggccgtccgacatttcacctccaagatctgcagc
catgaagacctggagcgtctggagagctacggcttcaggggcgaggcgctgggctccatc
tgtgccgtggctgaggtttccgtcaccacgaagacccaggaggacgacatcagcactcag
tacaccctggaccacactgggagggtggtctctcagaggccgtcccacctgggtcaagga
acgtcggtgagcgtgacaaagctcttcaagaacctgccggtcagacggcagttctactcg
tccactaagaagtgtaaggaggagctgaagaaggtccaggacctgctgatggcctacgcc
ctcataaagcccgagctcaggctgatgctggtgcataacaaggcggtgctttggcagaag
gcccgggcggccgacctgaggagcgccctggttgctacgctggggtccggcgccgtcgct
aacctgctgccatgccaccaggaacagccagagatggttctggacggcttcctgcccaaa
ccgggagccgatctgtcctccaccagctgctccgcctcagagaaaaccttcatcttcatc
aaccggcggcccgtccagcagaaggagatcatgaagctgctccgtcagcactactgcgcc
cagtacgccgaggacgccgcccgccaccgcttccccatcctgctgctcagcatctccgtc
tctccttcatctctggacgtcaacctgacgccggataaaacccaggtccttctggataac
aaggaggcggttctgacggcgttggaggctctgctggtttctctctacgggttccgctcc
agttcagctgaacagcagctgaaccacgaggctcctcctcctccgtcggctcgatcggag
gagaggaggaccagaacatctggctttcatgaagacgctcccacagcagaacccaaacat
ggcggcggtgccgaccctcaggctgctctgcagcgccaggcctccagctgcagctcctct
tcctccacggcggatgattggatcatcaacccgcctcccagcgagatctgctccggttcc
tctctctgtggagatgaaaccgctgcggctcggcccaaaccagaacagaccggttctgaa
ccggagaaaccagaggaggagcgtgaaaccaggaagatttctgcccaggactggagccgg
gggacggcgctgaccgacccggtcacaggagaacccctccgacccgtcctggtccaccgg
ccctctgggcccggttcccccggcccgcaggaggccaggagtaaaaagctgatcaattct
gtgacggagaaaggagcgacgctgacggcctacgacatgatcagcagccgcgccatgcgg
gcgccgccgtcccccgcctccctgttcgagaaggaggcccggtccgaggttctgagggag
cggcccgccgccagcctgcaggaggtcagcgccgccgttcaggagaggtggagaaacctg
agggaggaggacaggaagacgtatgaggagaaagccaagaaaaaacacgacctccatgag
cagaggaccaagctggcgtcagacgggggcccccaggggccgactgagaggcctaaagcg
cagagcgtgaagcgcaaagcgccgccgtccaaccagcagctgctggacgagctgttctcc
gctcagccccagaagaagaccaagactccgccccccaagccttcgcggcccctcctctgc
agcatggcggccctccgcctgaggctccagcgcctgtcttctcagagctcggcgccgccc
cggggcctccagctggtgaaccgcctgggctcccagagctgctgggccgtcatggcgggt
cggaggctcctgctgttcaacccgtatcgagtagaagaagctttgctgtttaagaggctc
caggagaaccacgtcctcccggcggcggttctgcagaacccgctccgcctcacagacggg
aacctgggaggagcagagtttgagacgctgtgcagcatgaagaaaggagcagcagagctg
gatggaagcgtcttcttctctgacccccggctgctcgccaacggcttcagagtcagactc
ccagcaggcctcccgtcagcggagaaacatctggaagtggcggccatggccgactgcgtg
ccttttctcggcgtggaggacctcagggaggttctgagcgccattcttcacaggaaggct
tccagaccgcaggactgccgtccgctcaaagtcacaaactacctaaaagccgaggcggtc
cggctggcccgtcagctgccttccagtttacgccgcggtgacgtggaggagctggtcgga
cggatggagcggcggctgggcggaaccgaacagacctgcatccacgggcggcggttcttc
catcacctggtcgacgttccgtctacagacgaggaggcggaggctctgctcaggcctctg
gaactctga
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