Cyprinodon tularosa (White Sands pupfish): 119797281
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Entry
119797281 CDS
T07496
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119797281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ctul03041
]
119797281
03009 Ribosome biogenesis [BR:
ctul03009
]
119797281
Enzymes [BR:
ctul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119797281
Spliceosome [BR:
ctul03041
]
Complex A
U1 snRNP components
U1 related factors
119797281
Complex B
119797281
Ribosome biogenesis [BR:
ctul03009
]
Eukaryotic type
Pre-60S particles
Helicases
119797281
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
119797281
NCBI-ProteinID:
XP_038162224
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGGGPPRFGGSRSGGGGGGKFGNPGERLRKKHWNLDELPKFEKN
FYQQHPDVARRTLQEAEQYRRSKTITVKGRDCPNPITQFHEASFPSYVMEVINKQNWTEP
TPIQAQGWPLALSGMDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQLRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEY
VQINIGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRRCDDL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFD
YPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQAADLVSVLREANQAINPKLLQMAEE
RGGRSRGGRGGDYRDDRRDRYSSGRRDFGGGRDRGYNNGPNKSYGTGSQNGGYGSNNGTS
NGYGGGNYNNNGQSNFSNNQTQTFVAQNNFQAQQCAPSNPVAQNGTSHPQFSFPQAPPQV
APPQHPPPPLVPYPMPPQFPQ
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagatcgcggcagagatagagacagaggctatggcggtggg
cctccccggttcggtgggagccggagtggtggcggtggaggaggaaagttcgggaatcca
ggggagcgattaaggaagaaacactggaacctggatgagcttccaaagtttgagaaaaac
ttttatcagcagcatcctgatgtcgcccgtagaacactgcaagaagcggagcaatacaga
aggtccaaaacgataacggtgaaagggagggactgccccaaccctataactcagttccat
gaggctagctttccctcttatgtgatggaggtcatcaacaaacagaactggactgaacca
acgcctatccaggctcagggatggcctttggctctcagtggcatggacatggtcggcatt
gctcagactggctctggaaagacactttcttatcttctgcctgcgattgtccacatcaat
catcagcctttcttggaacgtggggatggtccaatttgcttggtgttggcccccactcgt
gagctggcacagcaagtacagcaggtggcggctgaatacggcagagcttctcgtctgaaa
tccacctgcatctacggaggtgctccgaaagggcctcagctccgcgatttggagaggggt
gtagaaatttgcattgccactccagggaggctcattgacttccttgaggcaggaaagaca
aaccttcgccgatgcacttacttggtgctggatgaggcagacagaatgctggatatggga
tttgagcctcagatcaggaaaattgttgaccaaatcaggcccgacagacagactctcatg
tggagtgccacttggcctaaagaggttcgccaactggcagaagacttcctgaaggaatat
gttcaaatcaacatcggtgcactacagcttagtgctaatcataacatccttcagattgtg
gatgtttgcaatgatggagagaaagaaaacaagctgatccgtctgctcgaggagatcatg
agtgagaaggagaacaagacaatcatctttgtggagacaaagaggcggtgtgatgacctc
actcgtcgaatgagaagagatgggtggccagctatgggtatccatggtgacaaaagccag
caggaaagagactgggttcttaatgagttcaaatttggcaaagcccccatactcatcgcc
acagacgtcgcatccagaggcctagatgtggaagacgtgaaatttgtcatcaactttgac
taccctaacaactctgaggactatatccaccgcattggcagaacggctcgcagccaaaag
accggcacggcttataccttcttcactcccaacaacatgcggcaggcggcggacctcgtc
tccgtgctccgggaggccaaccaggccatcaacccaaagctcctccaaatggcagaagaa
agaggaggtcgttcaaggggcggcagaggtggtgactatagagacgaccgtcgggatagg
tattcctctggaaggcgtgattttggtggtggtagagatagaggttataacaatggacca
aacaagagttacggcacaggttctcagaatggaggctatggcagcaataacggcaccagc
aatggttacggtgggggcaactacaataacaatggacagtcaaacttcagcaacaaccaa
actcaaacatttgtcgcccaaaacaacttccaggcccaacagtgtgcccccagcaaccct
gtggctcagaacgggacgagccatcctcagttctcgttcccccaggctcccccacaggtt
gcccctccacagcatccccctccccctctggtgccgtaccccatgcctccacagttccct
cagtag
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