Cyprinodon tularosa (White Sands pupfish): 119797456
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Entry
119797456 CDS
T07496
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul03082
ATP-dependent chromatin remodeling
ctul03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119797456 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
119797456 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ctul01009
]
119797456 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctul03021
]
119797456 (smarcb1a)
03036 Chromosome and associated proteins [BR:
ctul03036
]
119797456 (smarcb1a)
Protein phosphatases and associated proteins [BR:
ctul01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119797456 (smarcb1a)
Transcription machinery [BR:
ctul03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119797456 (smarcb1a)
SWI/SNF complex
119797456 (smarcb1a)
Chromosome and associated proteins [BR:
ctul03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
119797456 (smarcb1a)
PBAF complex
119797456 (smarcb1a)
SWI/SNF complex
119797456 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
119797456
NCBI-ProteinID:
XP_038162453
LinkDB
All DBs
Position
Unknown
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPVKFQLEEDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLATVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENATQPEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
LLEDQTDQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgctaagcaaaacgtttggtcaaaaaccggtcaagtttcagctcgaagaggatgga
gaattttacatgattggttccgaggtggggaactacctgcgcatgttcagaggctctctc
tataaacggtatccttccttatggagaaaactggcaacagtggaagagcggaagaaaatt
gtggaatcatcacatgatcatggctacactcagctggccaccagtgttacgcttctgaag
gcctcagaggttgaggagatccttgaagggaacgatgagaagtataaagctgtgtctatc
agcacagagcctcccgcctacctcagggaacagaaagcaaagaggaacagtcagtgggtt
cccacgctgcccaacagttcccaccacctggacgcagtgccctgctccaccaccatcaac
cgcagccgactgggccgggacaagaagaggaccttccccctatgctttgatgaccacgat
cctgcggtgatccacgaaaacgccactcagccagaagttcttgtcccaatccgtctggac
atggagatcgagggccagaagctgagagatgccttcacctggaatatgaacgagaagctc
atgacgccagagatgtttgctgagatcctgtgcgacgacctggatctgaacccgctggct
tttgtccctgccatcgcctccgccatccgacagcagatcgagtcctaccccacagacagc
ctcttggaggaccagacggaccagagggtgatcatcaagctgaacatccatgtggggaac
atctctctggtggaccagtttgaatgggacatgtctgagagggagaactctccagagaag
tttgccctgaagctgtgctctgaactcggactgggcggagagttcgtcaccaccatcgcc
tacagcatccggggtcagctgagctggcaccagaggacatacgccttcagcgagaacccc
ctccctactgtggagatcgccatcaggaacacgggtgatgctgaccagtggtgccccctg
ctggagaccctgaccgatgcagagatggagaagaagatcagagaccaggacagaaacacg
agacgaatgaggcgtctggcgaatacagcacctgcgtggtaa
DBGET
integrated database retrieval system
