Cyprinodon tularosa (White Sands pupfish): 119798147
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Entry
119798147 CDS
T07496
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ctul04121
]
119798147 (pdzrn4)
Enzymes [BR:
ctul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119798147 (pdzrn4)
Ubiquitin system [BR:
ctul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
119798147 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
119798147
NCBI-ProteinID:
XP_038163432
LinkDB
All DBs
Position
Unknown
AA seq
805 aa
AA seq
DB search
MVFCSFSPKVNGRDFSKVEHDESVVETIRRDPIVVQVLRRTPTRATVVQRNTGSAQDVCV
VDVCTQTDITFEHIMALSKLRPATPPVPDICPFLLSDSCQSIHTMEHEFYECPEYLSNTT
ADVERTEEYEYEEVELCRLNSQDKLGLTLCYRTDDEEDTGIYVSQVEPNSIAARDGRIKE
GDRILQINGFEVQDREKAVALLSSEQAKSITLLVTRPEIQLEEEAVWLDDEQQQLVEELK
MEILEERRKQMEQSFEMADKLQCDGDITTDTATCSSNNLDSGFGRSTDSPEHQPLLARLY
RRSPAQCLRDRWQSEHQHNKRGNAVSHEAQSTRTHSTSQGNESVVSIRNGGCGVRGLENC
FQQLLELKCQIRNGGECGVYSIRHSIECSLTGQGGRDGESESEGGAARGVEQELKMLNEE
LRSIELECQSIMQAHQLRQSQQLEQSHSAPCSPGMNFKNAHKPHGRLDDIHEYPERSESD
RVREKDSSSAYNTAESARSTPLGMERSPDHSLRRKISITNQKNLRLASTASSNPIPIPKP
QGTHNPCRPADQGPVISSSPDQSNPSRSESDPALPADDERCDKKGRNRDSRRALPYGVSY
QTGTYHGQGGSKQLQSYMQLLQQHSALEYSQSQLSLLSVCRDPMNRNGRTGEPRLEWKVK
VRADGTRYVARRPARDRILRERALRIREERSGGMTTDDDAMSEMKMGRYWSKEERKQHLA
RAREQRKRREFMQKSRLDCLKEGPVSGAEGRKEINILELSHKKMMKKRNKKILDNWMTIQ
ELMSHGARVPEGSQVHNAFLSVTTV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggtcttttgttctttctcacccaaggtgaacgggcgtgacttctccaaggttgaacat
gacgaatcagtggtggaaaccatcaggcgagaccccatcgttgtccaagtcctccggcga
acccccaccagagccactgttgtgcaaagaaacaccggttccgcacaggatgtgtgtgtg
gtcgatgtctgcacacaaacagacatcacctttgagcacatcatggcattgtccaagctc
cgaccggctaccccgccagtcccagacatctgtccattcctgctctcagacagctgtcag
tccatccacaccatggaacatgagttttatgaatgtccagagtacctttctaatactaca
gcagacgtcgagaggactgaggaatatgagtatgaggaagtggaactctgtcggctgaac
agccaggacaagctcggtctgactctctgctaccggactgatgatgaggaggacactggt
atttatgtcagccaggtggagccaaacagcatagctgctagagacggacgcattaaggaa
ggagatcgcattttgcagataaatggctttgaagtgcaagaccgggagaaagctgttgcg
ttgttgtcaagcgaacaggcaaagagcatcacacttctggtgacaaggccagagatccag
ctagaggaggaggcagtgtggctggatgatgagcaacaacagcttgttgaagagctgaag
atggagatattagaggagaggaggaagcagatggaacaaagctttgaaatggcagataag
cttcaatgtgatggggacattacgacagatacagcaacctgttcttccaacaatcttgac
agtggatttgggcgcagcacagacagccctgagcaccaacctttattggcaagactctat
aggaggagtccagcccagtgtctaagggatcgatggcagtcagaacatcagcacaacaag
cgagggaatgctgtgtcacacgaagcccagagcacaagaacccattcaacaagccaaggc
aatgaaagtgtagttagtattcgcaatggtggatgtggagtccgaggtttagagaactgc
tttcaacagctcttagaactcaagtgccaaatccgtaatggaggtgaatgtggggtgtac
tctattcgacacagtatagagtgtagtctcactggacaaggtggacgggatggagagagt
gagagtgaaggtggcgcagcgagaggggtagagcaggagttaaagatgctaaacgaagag
cttcgtagtattgaattagaatgccagagcattatgcaagcccatcagctacgacagtct
cagcagcttgagcaatcccactctgcaccctgctcaccaggaatgaactttaaaaatgca
cacaagccacacgggaggctggatgatattcatgaatacccagagagatctgaaagcgat
agagttcgtgagaaggacagctctagcgcctacaacacagcagagagtgctaggtcaacc
ccactaggaatggagagatcccctgatcattccctgcggagaaaaataagcatcaccaac
cagaaaaacctcagactggcgtctactgcatcatccaatcccattcctattcccaagcct
cagggtacacataatccttgcagaccagcagatcaaggtccagttatctctagcagccct
gaccagagcaatccttcacggtctgagtcagacccagcactaccagctgatgatgaaagg
tgcgacaaaaagggaaggaacagagactcaaggagagctcttccctatggggtttcatat
cagacaggcacttatcatggccaggggggatccaaacaacttcagagctatatgcagctg
ttgcagcagcactccgctctagagtactcgcaaagccaactgagcctcctcagtgtgtgt
cgagatcctatgaaccgtaacggacgaacaggggagcctcgcctggagtggaaagtcaaa
gttcgtgcagatgggacacgttatgttgcacgtagacctgcccgtgaccgtatactgaga
gagcgggcacttcgaatcagagaagagaggagtggaggcatgaccacagatgacgatgca
atgagtgagatgaaaatgggccgctactggagcaaggaggagaggaagcagcatttggcg
agggccagggagcaaagaaagaggagggaattcatgcagaaaagccgtctcgactgctta
aaggaaggaccagtgagtggagctgaaggcagaaaggagatcaatatcttggagctcagt
cacaaaaaaatgatgaaaaagcgtaacaaaaagattctggacaactggatgaccatccaa
gagctgatgagccatggtgcaagggtcccagagggctctcaagttcacaatgcctttctt
tctgtcaccactgtttaa
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integrated database retrieval system
