Cyprinodon tularosa (White Sands pupfish): 119799172
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Entry
119799172 CDS
T07496
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
ctul
Cyprinodon tularosa (White Sands pupfish)
Pathway
ctul04510
Focal adhesion
ctul04512
ECM-receptor interaction
ctul04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ctul00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119799172 (col2a1a)
04518 Integrin signaling
119799172 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119799172 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ctul00536
]
119799172 (col2a1a)
Glycosaminoglycan binding proteins [BR:
ctul00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119799172 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
119799172
NCBI-ProteinID:
XP_038164901
LinkDB
All DBs
Position
Unknown
AA seq
1485 aa
AA seq
DB search
MLRFVDSRTVLLLVASQVVLLSVVRCQEEEDQEAGGCVQEAQQYNDKEVWKPEPCRICVC
DSGAVLCDEILCEEVKESCTNPIIPPGECCPICPADATAPFEAFGAKGQKGEPGEIADVV
GPRGPPGPMGPSGEQGPRGEAGAKGDKGSPGPRGRDGEPGVPGNPGPPGPPGPPGLGGNF
AAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGAPGETGEPGPAGPI
GPRGPPGPSGKPGSDGDPGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAK
GETGAAGAKGEAGAAGENGSPGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPPGPV
GPAGAPGFPGSPGAKGEAGPTGARGAEGQQGPRGEAGTPGSPGPAGASGNPGTDGIPGAK
GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGLKGETGPKGELGPAGPQ
GAPGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAA
GPKGATGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGASGAPGEDGRPGPPGPQGARGQP
GVMGFPGPKGANGEPGKAGEKGLVGRPGLRGLPGKDGETGPSGPPGPAGPAGERGEQGQP
GPPGFQGLPGPAGSPGESGKPGDQGVPGEGGAPGAVGPRGERGFPGERGGAGPQGLQGPR
GLPGTPGSDGPKGAIGPAGAPGAQGPPGLQGMPGERGAGGIPGAKGDRGDNGQKGPEGAP
GKDGARGLTGPIGPPGPSGPNGAKGETGPTGPTGAPGVRGAPGDRGEVGPPGPAGFAGPP
GADGQPGAKGELGESGQKGEAGAPGPQGPSGAPGPVGPTGVAGPKGARGAQGAPGATGFP
GAAGRVGPPGANGNPGPPGPAGPSGKDGPKGVRGDAGPPGRPGDAGLRGPAGPPGEKGEP
GEDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGGAGDRGPP
GPVGPPGLTGPAGEPGREGTPGSDGPPGRDGAAGVKGERGNTGPAGAPGAPGAPGSPGPV
GPLGKQGDRGEPGSQGPAGPPGSAGARGIAGPQGPRGDKGEAGEPGERGQKGHRGFTGLQ
GLPGPPGPAGDAGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPIGPPGPRGRSGETGPA
GPPGNPGPPGPPGPPGPGIDISAFAGLGQTEKGPDPLRYMRADEASSSLRQHDIEVDSTL
KSLNNQIENLRSPDGTKKNPARSCRDLKLCHPGWKSGDYWVDPNLGSTADSIKVFCNMET
GETCVYPTIPNVPKKNWWTSKSKERKHVWFGETMNGGFHFSYGQDGPAANIQLTFLRLLS
TEASQNITYHCKNSIAYMDQASGNLKKAVLLQGFNDVEIRAEGNSRFTYSVLEDGCKSHS
GRWSKTVFEYKTQKTSRLPIVDIAPMDIGGANQEFGVDVGAVCFL
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atgttgcgctttgtggactcaaggactgttctgctacttgtagcatcccaagttgtttta
ctatccgtggtcagatgtcaggaagaggaagatcaggaggcaggtggctgtgtccaggaa
gcccagcagtataatgataaggaggtgtggaagccagagccgtgccgcatctgtgtgtgt
gacagtggagcggttctgtgcgatgagatactctgcgaggaggtcaaagagtcatgcacc
aaccctatcatcccacctggagaatgctgccccatctgccctgctgatgccactgcccct
tttgaggcgtttggtgctaagggtcagaagggagaaccaggagagattgcagatgttgta
ggacctagaggaccacctggccctatgggcccttctggtgaacagggaccacgtggagaa
gctggcgcaaagggcgacaagggaagtcccggaccaagaggaagagatggcgaacctggc
gtacctggcaaccctggaccccctggaccacctggaccaccaggtctcggaggaaacttt
gctgctcagatggccggaggttttgatgaaaaggccggaggtgctcagatgggtgtgatg
caagggccaatgggtcccatgggtccacgtggtccccctggacctaccggagctcctggg
ccacagggtttccaaggtgcaccaggagagactggagaaccaggccctgctggaccaatt
ggacctcgtggaccgcctggaccatctggaaaaccaggaagtgatggggaccccggcaaa
cctggtaaagctggtgaacgtggacctgcagggcctcagggagctcgtggatttcctgga
acacccggacttcctggaataaaaggacacagaggtcaccctggtctggatggagctaaa
ggagagactggtgctgcaggagccaagggtgaagctggtgcagctggagaaaatggttcc
cctggaccaatgggcccacggggtctgcctggtgagaggggacgccctggtgcttccgga
gctgcaggtgcccgtggaaatgatggcttgcctggtcctgctggtccccctggcccagtt
ggtcctgctggagctcccggtttcccaggatccccaggagcaaagggtgaagctggtcct
actggtgcccggggagctgaaggacaacagggaccacgtggagaggctggtactccagga
tctccaggaccagctggggcatcgggtaaccctggcactgatggtattcctggagctaaa
ggttctgctggtgctcctggtattgctggtgcccctggattccccggtcccaggggtcca
ccaggaccacagggagcaactggacctcttgggcccaaaggacaatctggagaccctggt
cttccagggttgaagggtgaaactggaccaaagggagagcttggccctgctggtcctcaa
ggggctcctggccctgctggagaagaagggaagaggggtgcaaggggtgagccaggaggt
gctggaccaatcggacctcctggagaaagaggagctcctggtaaccgtggtttcccaggt
caggatggtcttgctggtgctaagggtgcccccggtgaccgtggtgtccctggtgccgct
gggcctaaaggagcgactggagatcctggtcgtacaggcgagcccggccttccaggagcc
agaggtcttactggtcgtcctggagatgctggtccccaaggcaaagtcggagcttctggt
gctcctggtgaggacggtcgtcctggtcctcctggccctcagggagcccgtggacagcct
ggagtgatgggattccctggaccaaaaggagctaatggtgaacctggaaaggcgggagag
aagggacttgttggtcgacctggtctaagaggtctacctggaaaagatggtgaaactggt
ccatctggacctcctggacctgctggacctgctggggagagaggagagcaaggacagcct
ggacctcctggcttccagggtctgcctggaccagctggttccccaggagagtctggaaaa
cctggagatcagggtgttcctggagaaggtggagctccaggtgctgttggacccagaggt
gagcgtggtttccctggtgagaggggtggtgctgggcctcagggtcttcaaggaccccgt
ggacttcctggaacacctggaagtgatggacccaagggtgctattggaccagccggtgcc
cctggagctcagggacccccaggtctgcagggtatgcctggagagcgaggagccggtggt
atcccaggagccaagggagatagaggtgacaacggacagaaggggcctgaaggtgctcca
ggaaaagatggtgctaggggtttgactggtcccataggtcctcctggcccatctggacca
aacggtgccaagggtgaaactggacctactggtcctactggtgctcctggggtccgtggt
gctcctggtgaccgtggtgaggttggtcctcctggacctgctggctttgctggacctcct
ggtgcagatggtcagccaggtgccaagggagagctcggagagtctgggcagaagggagaa
gctggtgctcctgggcctcagggaccatctggagctccaggaccagtaggccctactggt
gtagcgggacctaagggagcacgtggtgctcaaggagctcctggtgctacaggtttccct
ggtgctgctggcagagttggacctcccggtgctaatggtaaccctggccctcctggtcct
gctggtccttctggtaaagatggtccaaaaggtgtccgtggtgatgccggccctccagga
agaccaggagatgctgggctccgtggacccgcagggcctccaggagagaaaggagagcct
ggagaggatggacctcctggtgctgatggtccttcaggtcctcagggtttggctggatcc
cgtggtattgttggtttgcctggtcagcgtggtgagagaggcttccctggtctccctgga
ccttctggagaacctggtaaacagggatcccctggtggtgctggtgaccgtggaccacct
ggacctgtcgggcctcctggactcactgggcctgctggagagcctggcagagagggaacc
cctggatcagatggacctcctggaagagatggagctgctggagttaagggagagcgaggt
aacacaggtcctgcaggcgcccccggagctcctggagcccctggttctcctgggccagtt
ggacccctcggcaagcagggagacagaggagagcctggttctcaaggacctgcaggtcca
ccaggatcagctggtgctagaggaattgctggaccccaaggaccacgtggagataaggga
gaggcgggcgagcctggagagagaggacagaagggtcatcgtggcttcaccggtctgcag
ggtcttcctggacctccaggtcctgctggtgatgccggagccgccggacctgctggacca
agcggagctaagggaccccctggtccagttggacctgctggtaaagacggatctaatgga
cagcctggccccattggacctcctggacctcgaggacgttctggagaaacgggccctgct
ggtcctcctggtaaccctgggccccctggtcctcctggtcctccaggcccaggtattgat
atctctgcctttgctggtttgggtcagactgagaaaggccctgatcctctcaggtacatg
agggctgatgaggcctccagctccctgaggcagcatgatattgaagtcgattcaactctc
aagtccctcaacaaccagattgagaatttgcgcagccccgacggcaccaagaagaaccct
gctcgctcttgcagagacctcaagctgtgccaccctggctggaagagcggtgattattgg
gttgatcctaacctgggctccacagccgactcaatcaaggtcttctgtaacatggagact
ggagagacctgtgtctacccaaccattcctaatgtaccaaagaagaattggtggaccagc
aagagcaaggaacgcaaacatgtctggttcggggagacaatgaatggtggcttccatttc
agctatggccaggatggtcctgctgccaacatacagctaaccttcttgaggcttttgtcc
actgaggcatcccagaacatcacttatcactgcaaaaacagcattgcatacatggatcag
gcctcaggaaaccttaagaaggcagtgctactgcagggcttcaatgatgtggagatccgc
gcagagggcaacagtcgattcacatacagtgtgctggaggatggttgcaagagtcactca
ggccggtggagcaagactgtcttcgagtacaaaacacagaaaacctcccgtctgccaatc
gtagacattgctccaatggacatcggaggagcaaatcaagaatttggagtggatgtaggc
gccgtctgcttcttgtaa
DBGET
integrated database retrieval system
