Chryseobacterium sp. C-71: LNP04_03510
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Entry
LNP04_03510 CDS
T08775
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ctur
Chryseobacterium sp. C-71
Pathway
ctur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP04_03510 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctur03019
]
LNP04_03510 (recQ)
03400 DNA repair and recombination proteins [BR:
ctur03400
]
LNP04_03510 (recQ)
Enzymes [BR:
ctur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LNP04_03510 (recQ)
Messenger RNA biogenesis [BR:
ctur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LNP04_03510 (recQ)
DNA repair and recombination proteins [BR:
ctur03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LNP04_03510 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
UFH32799
LinkDB
All DBs
Position
complement(778360..780564)
Genome browser
AA seq
734 aa
AA seq
DB search
MSAKKANLSGELKKYFGFSTFKGQQELIIEELLQGKDIFVLMPTGGGKSLCYQLPALISE
GTAIVVSPLIALMKNQVDAVNGLSSENGVAHVLNSSLNKTQTKQVFDDIKSGKTKLLYVA
PESLIKEDYLEFFRDVKISFVAIDEAHCISEWGHDFRPEYRNLKSIIDKIADVPVIALTA
TATPKVQDDIQKTLGMTDALVFKESFNRANLYYEVRPKVNVDKEIVKFINKHKGKSGIVY
CLSRRKVEEFAQLLQVNGVNALPYHAGLDQKVRVTNQDKFLMEEADVIVATIAFGMGIDK
PDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQKPVSEREI
GLQLLNEVVGYAETSMSRRQYILYYFGEIFDPVTGEGANMCDNASNPPKLKDATNDLKKV
LELIDTTKEKFKSKDLISAIVGKENAVTKSYKLEQTSFFGFGKDEKDNYWKTILRQATVQ
NFLLKDIETYGVLKISPKGHEVINGKFKESFLIAEDREFDLSQTKADSDQVQMQANGSLD
QNLFALLKELRKKVAKKHGIPPYTVFMDPSLEDMTVQYPITLEEIAKVYGVGEGKAKKYG
KEFADFISKYVEDNNIERTQDMVLKNVANKSSHKVFIIQSTDKKIDLEDIARAKNLSMND
LLKEMERIVYQGTKLNIDYYIEENFDEDMVDEFMEFMTESESDSMKVLLDEFGDELSDEE
VRMLRIKFISDVAN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaaaaaaagccaatttatcaggcgagttaaagaaatacttcggattttctact
ttcaaaggtcagcaggaacttattattgaagagctgttgcaaggcaaagacatttttgtc
ttgatgccgacaggaggtggtaaatctttgtgttatcaacttcccgcccttatttcagaa
ggaactgctattgtggtttcaccattgattgctttaatgaaaaatcaggtggatgccgtc
aacggtctttcatctgaaaatggagtagcccatgttcttaattcttctcttaacaaaacc
cagaccaaacaggtttttgacgatataaaaagcgggaaaaccaaactattatatgtagct
ccggaatctttaatcaaagaagattatctggaatttttcagagatgtgaagatctcattt
gttgcgattgacgaagcacactgtatttcagaatggggacacgatttcagacccgaatac
agaaacttaaaatcaatcatcgataagattgcagatgttccggttattgcacttacagca
acggcaacgccaaaagttcaggatgatatccagaagactttaggaatgacagatgctttg
gtttttaaagaaagtttcaacagagctaatttgtattatgaagttcgcccgaaagtaaat
gttgataaagaaattgtaaagtttatcaataaacacaaaggaaaatcaggaattgtatac
tgtttgagccgaagaaaagtagaggaatttgcccagcttttacaggttaacggagttaat
gcgcttccttatcatgctggtttagaccaaaaagtaagagtgacgaatcaggataaattc
ctgatggaagaggctgatgttattgtcgcaaccatcgcatttgggatgggaattgataag
ccggatgttcgtttcgtgattcactatgatttcccgaaatctctggaaagctattatcag
gaaactggtcgtgcaggtcgtgatggaggagaaggtcattgcttggctttctatgatcca
aaagatattgaaaaattagaaaaattcttggctcaaaagcctgtatccgaaagagaaatc
ggattacagcttttaaatgaagtggtaggttacgctgaaacttcgatgagcagaagacaa
tatatattgtattattttggcgaaatttttgacccagtcacaggtgaaggtgcaaatatg
tgtgataacgcatcaaaccctccaaaattaaaagatgcaaccaatgatttgaaaaaagtc
ttggaattgattgatacaaccaaagaaaaatttaagtcaaaagatttgatttctgcaatc
gtcggaaaagaaaatgctgttacaaagtcttataaacttgagcaaacttcgtttttcggc
ttcggaaaagatgaaaaagacaattattggaaaacaattttaagacaggcaacagtacag
aattttttattgaaagatatagaaacgtacggtgttttaaaaatctcgcctaaaggtcat
gaagttattaacggaaaattcaaagaatctttcctgattgccgaagatcgtgagtttgat
ttgtcacaaaccaaagcagacagcgatcaggtacaaatgcaggcgaacggaagtcttgat
cagaatttatttgctctattaaaagagctcagaaaaaaggttgccaaaaaacatggaatt
cctccttacacggtttttatggacccgagtttggaagatatgaccgttcaatacccgatt
actctcgaagaaattgcaaaagtttacggtgtcggagaaggaaaagcaaagaaatatggt
aaagaattcgctgatttcatctctaaatatgttgaggacaataatatagaacgtactcag
gatatggtcttgaaaaatgtggcgaataaatcaagtcacaaagttttcatcattcaaagt
acagataaaaaaattgatcttgaagatattgcaagagcaaaaaatctctcaatgaatgat
ttgttgaaagaaatggaacgtattgtttatcagggtactaaattgaatatcgattactat
attgaagaaaattttgatgaagatatggtagatgaattcatggaatttatgacagaatct
gaaagcgatagcatgaaagtcttgctggatgagtttggtgatgaactttctgacgaagaa
gtgagaatgctgagaatcaaattcattagcgacgttgcaaattaa
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