Chryseobacterium sp. C-71: LNP04_07365
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Entry
LNP04_07365 CDS
T08775
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ctur
Chryseobacterium sp. C-71
Pathway
ctur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP04_07365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctur03019
]
LNP04_07365
03400 DNA repair and recombination proteins [BR:
ctur03400
]
LNP04_07365
Enzymes [BR:
ctur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LNP04_07365
Messenger RNA biogenesis [BR:
ctur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LNP04_07365
DNA repair and recombination proteins [BR:
ctur03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LNP04_07365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
DUF7022
SOAR
Motif
Other DBs
NCBI-ProteinID:
UFH33519
LinkDB
All DBs
Position
1628299..1630200
Genome browser
AA seq
633 aa
AA seq
DB search
MISSQDFQELKNKTLKHFWGYDTFRDSQGDIIDSVITGNDTLVLLPTGAGKSLCYQLPAL
LREGVCLVISPLLALMKDQVNQLKFRGIEAEYLSSELDDFDAEVIYNRCKDGLTKLLYVS
PERLTNFHFIQQIEEIQLSFIAVDEAHCISEWGQDFRPSYQNIKDFRKNNPEIACLALTA
TATPKVLEEIKNKLELKKPNVFQKSFKRDNIKIFSEEISDKYQRIFNILKYAKESGIIYV
RTRKDAELLTEYLHRNKISNVDYYHAGLTTKEKNERQNFWNNSDQNVLISTNAFGMGIDK
DNVRFVIHFSPSQSIENYYQEIGRAGRDGKKSFAFMLWDQQEILNFDQILRNQIPNKAEF
LKIISFLYSKFQVAEFELPEKVFQLNISGIQNFTKLSTAKIKNVLNFLHTQEIIYYNSNK
SLSSLELSVKADEIDQIPQKDAYFIELLLRSISGITSHKVMFSEQKVSDKIGVSIHLIKE
RLKELQQKNYLEYIDGALASVKFLKPRDERVTTSIYWKLFEQIQKNKIQKWEEMKFYIED
STYCKMKLILAYFGEKNSKNCGQCTVCEKNKRSIFGKNISSEITGLLAKKPATIEELSIQ
LNFHAKEDILEHLIFLLDSGKVKMLNFRTYALK
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgatttcttctcaagattttcaggaactgaaaaataaaaccctaaagcatttttggggt
tatgacacctttagagattctcaaggtgacatcatcgattctgtgattaccggaaatgac
actttggttcttttaccaaccggcgcgggaaaatcactttgctatcaacttccggcttta
ttgagagaaggtgtttgtttggttatttctccgttattagctttgatgaaagatcaagtc
aatcagttaaaattcagaggaattgaagctgaatatctgtcttcagaattagacgatttt
gatgccgaagttatttacaacagatgtaaagatggtttaaccaaactcctttacgtttca
ccggaaagattgactaactttcattttattcagcagattgaagaaatacaattatcattt
attgcggtagatgaggcgcactgtatttcagaatggggacaagatttcagaccgagttat
caaaacattaaagatttcagaaaaaacaatcctgaaattgcgtgtcttgcattgacggca
acagcaactccaaaagttttagaggagataaaaaataaacttgaattaaaaaaaccgaac
gtttttcagaaaagttttaaaagagataatattaaaatcttttcagaagaaatttcggat
aaataccaaaggatttttaatattctaaaatatgctaaagaatccggcatcatctatgta
agaaccagaaaagatgctgagctgcttacagaatatcttcacagaaataaaataagcaac
gtagattattaccatgccggattaacgaccaaagaaaaaaatgaaagacagaatttctgg
aacaatagcgatcaaaatgtactgatctccaccaacgcattcgggatgggaattgataaa
gataatgtgcgcttcgtcattcacttctccccttctcaatcgattgaaaactattatcag
gaaatcgggcgtgcaggaagagacggaaagaaaagttttgcgttcatgctttgggatcag
caggaaattttaaattttgatcagattctaagaaatcaaatcccaaacaaagctgagttt
ttgaaaattatttcctttctatattctaagtttcaggtggcagaatttgaacttcccgaa
aaagtttttcagttaaatatttcaggaattcaaaacttcacaaaactttcaacggccaaa
attaaaaacgttttaaattttctacacactcaagagattatttattacaacagcaacaaa
agcttatcatctttagaactttcagtaaaagcagacgaaattgatcagattcctcaaaaa
gacgcttactttattgaacttcttttgcgttcgatttcaggaatcaccagtcacaaagtg
atgttcagtgaacagaaagtgagcgacaaaattggagtaagtattcatttaattaaagaa
agattaaaagaactacaacagaaaaattatcttgaatatatcgatggagctttggcaagt
gtgaaatttcttaagccacgagatgaacgagtgaccaccagcatctattggaaacttttt
gaacagattcagaaaaataaaattcagaagtgggaagaaatgaaattttatatcgaagat
tccacctactgtaaaatgaaactgattcttgcttattttggcgaaaaaaactcaaaaaac
tgtggacagtgtacggtttgcgaaaaaaataaacgttccatatttgggaaaaatatctct
tcagaaatcacaggtttattggctaaaaaaccggctacaatcgaagaactttcaattcag
ttaaattttcatgcaaaagaagatattttagaacatctcatctttcttttagattccgga
aaagtaaaaatgctgaacttcagaacgtacgcgttgaaataa
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