Chryseobacterium sp. C-71: LNP04_11255
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Entry
LNP04_11255 CDS
T08775
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ctur
Chryseobacterium sp. C-71
Pathway
ctur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP04_11255 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctur03019
]
LNP04_11255 (rnr)
03016 Transfer RNA biogenesis [BR:
ctur03016
]
LNP04_11255 (rnr)
Enzymes [BR:
ctur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LNP04_11255 (rnr)
Messenger RNA biogenesis [BR:
ctur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LNP04_11255 (rnr)
Transfer RNA biogenesis [BR:
ctur03016
]
Prokaryotic type
tRNA degradation factors
LNP04_11255 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
S1CSD-TOTE-2
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
UFH30554
LinkDB
All DBs
Position
complement(2447368..2449518)
Genome browser
AA seq
716 aa
AA seq
DB search
MPKKNKYISQKNDSKLLEIGRLILRFMNQNQTKIYNYKQISDGIDYKNPRQRELVIQSLH
KLLANQRIKETEKGKFSINLNIEGTLTGIIDFNQSGNAYVTVENLKDDVFVHAKNVKDAL
QGDKVLIVTYNFKGKKMEGSVLEVLERSRTEFVGTFQLVPHKEFGFVVCDKKTINTDIFI
PKGKINGAENGDKVVVKMLEWKPGDKNPDGEIIKVLGAPGEHETEIHSILAEYGLPYNFP
EEVEADAEKIDRRITEEEVAKRRDMRKICTFTIDPKDAKDFDDALSIQKLDNGNWEIGVH
IADVSHYVVPGTMLDDEAYERATSVYLVDRVVPMLPEILSNDVCSLRPNEDKFTFSAVFE
MNDKAEVVNEWFGRTAIHSDRRFTYEEAQERIETQEGDLTEEILTLDRLAKIMRDQRIKN
GAITFDRSEVRFNLNEKSEPIGVYFKVSKDSNHLIEEFMLLANRKVSEFVSLKKGRPNGN
TFIYRVHDDPDPAKLEALRDFVSTFGYKMDLANTKKVAESLNNLLSEVKGKGEENMIETL
AMRSMSKAVYSTEPIGHYGLGFDYYSHFTSPIRRYPDLLAHRLLQHYLDGGKSPDKNELE
EKAKHCSARERLAADAERDSIKFMQVKFMEKHLGETFTGVISGVAEFGFWVQIPENGAEG
LIKLRDLMDDSYTYDKSTHAVYGSRTGRKFQLGEEVQIKVVKANLIQKQLDFKIVD
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaaaaaataaatacataagtcagaaaaatgactcaaaactcttggaaattgga
agactgattctccgttttatgaatcagaaccaaaccaaaatatacaattacaaacagatt
tcagacggaattgactataaaaatccgagacagcgtgagttggtcatccaatctttgcat
aagctcttagcaaaccaaagaatcaaggaaactgaaaaaggaaaattcagcattaatctt
aatattgaaggaactttaacaggaattatcgatttcaaccaaagtggaaacgcttatgta
acagtcgagaatttaaaagatgatgttttcgttcatgcaaaaaatgtgaaagatgcattg
cagggagataaagttcttatcgttacttacaattttaaaggaaagaaaatggaaggctct
gtgctggaagttttagaaagaagccggacagagtttgtaggaactttccagcttgttcca
cacaaagaatttgggtttgtagtttgcgataaaaagacgattaacacggatatttttata
ccaaaaggaaaaattaacggtgcggaaaacggagataaagtcgttgtaaaaatgcttgaa
tggaaacctggcgacaaaaatcctgatggtgaaattataaaagttcttggagctccggga
gaacacgaaacagaaattcactctattttggctgaatacggtttgccgtataatttccct
gaggaagtcgaagcagatgcagaaaaaatcgacagaagaattaccgaagaagaggttgcg
aagcgtagagacatgcgaaaaatctgcacgtttaccattgacccgaaagatgcaaaagac
ttcgatgatgctttatctatccaaaaattagataacggaaattgggaaatcggagtacac
attgccgacgtttctcattatgtagttccgggaacaatgctggatgatgaagcctatgaa
agagcaacttcagtctatctggttgaccgagttgtaccgatgttgccagaaattttgagt
aatgacgtttgttcgcttcgtccaaatgaggataaattcacgttctcagcggtttttgag
atgaatgataaagctgaagtggtgaatgaatggttcggtagaactgccattcactcagac
agaagattcacctatgaggaagctcaggaaagaattgagactcaggaaggcgatttaaca
gaagaaattctgacactagacagactcgcaaaaatcatgcgtgaccagagaattaaaaac
ggtgcgattaccttcgacagaagcgaagttcgatttaatttgaatgaaaagagtgaaccg
attggggtttactttaaagtcagcaaagactcaaatcatttgattgaagaattcatgctt
ttggcgaacagaaaagtttctgaatttgtttctcttaaaaaaggaagaccaaacggaaat
acctttatttacagagttcacgacgatccggatccggcaaaattagaagctttacgagat
ttcgtttcgactttcggatacaaaatggatctggcaaacactaaaaaagttgccgaatct
ctgaataatttactttctgaagtaaaaggaaaaggtgaggaaaatatgattgaaactctg
gcaatgcgaagcatgagcaaagcggtctactctaccgagccaatcggtcactacggtctt
gggtttgattattattcacacttcacctctcctatccgtcgttatccagatttattggcg
cacagattacttcagcattatttagacggcggaaaatctcccgataaaaatgaattagaa
gaaaaagctaaacattgcagcgccagagaacgtttggcagccgatgcagaaagagattcc
atcaaatttatgcaggtaaaattcatggaaaaacatttgggagaaactttcactggtgtt
atttcgggagttgcagaatttggtttctgggtgcagattcctgaaaacggtgctgaaggt
ttgattaaattacgtgatttgatggatgattcttatacgtatgataagtcgacacacgct
gtttacggttcaagaacgggtagaaagtttcagctgggcgaagaagttcagatcaaagtg
gtaaaagccaatttaattcaaaagcaattagactttaagattgttgattaa
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