Chryseobacterium sp. C-71: LNP04_12560
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Entry
LNP04_12560 CDS
T08775
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ctur
Chryseobacterium sp. C-71
Pathway
ctur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP04_12560 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ctur03021
]
LNP04_12560 (rho)
03019 Messenger RNA biogenesis [BR:
ctur03019
]
LNP04_12560 (rho)
Transcription machinery [BR:
ctur03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LNP04_12560 (rho)
Messenger RNA biogenesis [BR:
ctur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LNP04_12560 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
AAA
Mor
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
UFH30806
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All DBs
Position
2738092..2739969
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AA seq
625 aa
AA seq
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MFNIETLRSKSVTELTKILKDLGVKVARNSTDNDKIFAVLDFQASNPKVAKDYFNTTESN
TETEEKPAAAEKVVKTAPKKPAPKKPARPKVATETPKEEAEPAKTEEATDEKEVIAEAII
KEPAKGAVEERPANNASKQKRKRVAPTNTSEEQTQEKEETPTNTDSQVAAAAPAQAQTRE
ERPKRPQQQQGQNPNQKGPNHPQQNGGNPQNRNQNNNQNQNSNQNNPNQNQNPNQNQNRN
SDRQEENESRKEFNFDGMVSIEGVLEILPDNYGFLRSSDFSYISSPDDVYVSTAQIRNFG
LKTGDTVRGIVRLPKEGEKYFSLLKPTEVNGRDLAFIKDRVAFEYLTPLFPEEKFNLSGD
NSTMSTRIVDLFAPIGKGQRAMIVAQPKTGKTMLLKDIANSIAANHPEVYMMVLLIDERP
EEVTDMERSVNAEVIASTFDEAADKHVKVANLVLAKAQRMVECGHDVVILLDSITRLARA
YNTVTPASGKVLSGGVDANALHKPKRFFGAARKIENGGSLTIIATALIDTGSKMDEVIFE
EFKGTGNMELQLDRKIANRRIYPAIDLVSSSTRRDDLLLDEVTSQRMWIFRKYLSEMNPI
EAMEFVNKNIRGTLNNEEFLMSMNR
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacatagaaacgttaaggtcaaaatccgtaacggaattgactaaaatcctcaaa
gatttgggcgttaaggttgcaagaaacagcacagataatgataaaatcttcgcagttctt
gattttcaggcttccaaccctaaagttgcaaaagattacttcaatactacagaaagcaac
actgaaactgaagaaaaacctgctgcagcagaaaaagtggtgaaaactgctcctaaaaaa
ccagcacccaaaaaaccggcaagaccaaaagttgccacagaaactcctaaagaagaagca
gaacctgccaaaactgaggaagcaacagacgagaaagaagttattgcagaggcaatcata
aaagaacctgcaaaaggtgctgtagaagaaagacctgcaaataatgcttcaaaacaaaaa
agaaaaagagtagctcctaccaatacttctgaagaacaaactcaggaaaaagaagaaact
ccgacaaatacagattctcaagtagctgccgcagctcctgcacaagcacagacgagagaa
gaaagacctaaaagacctcaacaacaacaaggtcagaatccgaaccaaaaaggtccaaac
catccacagcaaaacggtggaaatcctcaaaacagaaatcagaacaataatcaaaatcag
aattctaaccaaaacaaccctaatcaaaaccaaaatcctaatcaaaatcagaacagaaat
tctgacagacaggaagaaaatgaatccagaaaagagttcaatttcgacggaatggtaagc
attgaaggtgttttagagattctgcctgataactacggatttttacgttcatcagatttc
agttatatctcttcaccagatgacgtgtatgtttctactgcacagatcagaaattttggg
ttaaaaacaggagatactgtaagaggtattgtacgtttgccaaaagaaggtgaaaaatat
ttttctttattaaaaccaacagaagttaacggacgcgatcttgcatttatcaaggatcgt
gttgcttttgaatatttaactccgcttttcccggaagagaaatttaatctttcaggagat
aattctacgatgtctacaagaatcgtcgatttatttgcaccgattggaaagggtcagaga
gcgatgattgttgcccagccaaaaaccggtaaaacaatgttgctgaaagatattgctaat
tctatcgcagccaatcacccggaagtttatatgatggtgcttttgatcgacgaacgtcct
gaagaagttaccgacatggaaagaagtgtaaatgctgaagtaattgcgtctacatttgat
gaggctgccgataaacacgtaaaagtggctaacctagttcttgcgaaagctcagagaatg
gtagaatgtggtcacgatgtggttattttattagattcaattacaagattagcaagagct
tacaatacggtaactccggcatcaggaaaagtgctttcaggtggtgtagatgctaacgct
ctacataaacccaaaagattctttggtgcagcaagaaaaatcgaaaacggaggatcattg
acgattattgcaacggcattgattgatactggttctaaaatggatgaggttatttttgaa
gaattcaaaggtaccggaaacatggagcttcagttagacagaaaaattgccaacagaaga
atttatcctgctattgatttggtttcttcaagtacaagaagagatgatctattgctggat
gaggtaacttcacagagaatgtggattttcagaaaatatctttcagaaatgaatcctatc
gaagcgatggaatttgtcaacaaaaatatcagaggaactctgaacaacgaagaattttta
atgtctatgaatagatag
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