Chryseobacterium sp. C-71: LNP04_13635
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Entry
LNP04_13635 CDS
T08775
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ctur
Chryseobacterium sp. C-71
Pathway
ctur03410
Base excision repair
ctur03430
Mismatch repair
ctur03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ctur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LNP04_13635 (recJ)
03430 Mismatch repair
LNP04_13635 (recJ)
03440 Homologous recombination
LNP04_13635 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctur03400
]
LNP04_13635 (recJ)
DNA repair and recombination proteins [BR:
ctur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LNP04_13635 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LNP04_13635 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LNP04_13635 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
EFL1
DSPc
Motif
Other DBs
NCBI-ProteinID:
UFH31015
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Position
complement(2956968..2958683)
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AA seq
571 aa
AA seq
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MSQKWIYKPEPDEETVDGLSSSLGFGTFESKLLVLRGIDNYQKAREFFKPNFTDIHNPFL
MADMQKAVERIATAIENGEKIMVYGDYDVDGTTAVALTYLYLRKIVQKKYLDFYIPDRNS
EGYGISTEGIDYAKENGFSLIIALDCGIKAIDMINYAKGKQIDFIICDHHLPGDEIPDAV
AVLDPKRSDCRYPFKELSGCGVGFKLCQGLNTIYKIPETELFELTDLLAISIAADIVSMT
GENRVLAKMGLKVLRKTRNLGLRLLIPEDKLSHFEISNIVFEIAPKINAAGRISHGKAAV
ELMVSDNLKHAQQIVGDIMNLNDERRELDMNSTLSALNQVIESQQETKYSTIVYHPEWNK
GVIGIVASRLIETYYKPTLVFTDGNNGEMVASARSVSDFDVHEALDLCSEYFLKFGGHHA
AAGLSMEKDKFEAFKIKFEKTVAEKIKDHQKEPSITIDADVNADEINRDFINFHRKLAPF
GPQNMKPNLVLRNQKIAGYLKTMGKDNNHLKFYIKQESTGRNIECVGFKLGQFADDFRNK
SFDIAFTLEENHWKGNVTHYLNIRDVKFRED
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaaaatggatttacaaacccgaacctgatgaagaaactgttgacggattgagt
tcgtcgcttggttttggaacttttgaatccaaactattggttctcagaggaattgacaat
taccaaaaagcgcgtgaatttttcaaaccaaatttcacggatattcacaaccctttttta
atggcagatatgcaaaaagcagttgagcggattgctacagctatcgaaaatggggaaaaa
ataatggtttacggagattacgatgtcgacggaaccactgccgttgcgctcacttatctt
tatttaagaaaaatagttcagaaaaaatatttagatttttacattccagacagaaattct
gaaggatatggaatttctaccgaaggaattgattacgccaaagaaaacggtttttctctg
attattgcattagactgcggaatcaaggcgattgacatgattaattatgccaaaggaaaa
caaattgatttcattatttgcgatcaccatttacccggagatgaaattccggatgctgtg
gcggttttagatccgaaaagatcagattgtcgctatccttttaaagaactttcaggatgt
ggagtgggttttaaattgtgtcagggattaaataccatctataaaattccggaaactgaa
ttatttgagctcacagatctattggctatctcaattgctgcagatatcgtatccatgacc
ggtgagaacagagttttagcaaaaatgggactaaaagttctcagaaaaacccgcaattta
ggtttaagattattaattcctgaagataaactttcgcattttgaaatttcaaacattgtt
tttgaaattgctcctaaaataaacgctgcgggaagaatttctcacggtaaagctgctgtc
gaattaatggtttcagacaatctaaaacacgcccagcaaattgtaggcgacattatgaat
ctgaatgacgaaaggcgagagctcgatatgaactctaccctttctgcactcaaccaagtc
atcgaatctcagcaggaaacaaaatattccacgattgtttaccatcctgaatggaacaaa
ggtgtgataggaattgtagcctcaagattgattgaaacatattataaaccaactttggtt
tttaccgacggaaataatggagaaatggtagcgtctgcaagatccgtttcagattttgat
gtgcatgaagcgctggatctttgttcggaatactttctgaaatttggaggacatcacgct
gctgccggactttctatggaaaaagataagtttgaagctttcaagattaaatttgaaaaa
acagtagccgaaaaaattaaggatcatcaaaaagagccttctatcacaatagatgctgac
gtaaatgcagacgaaatcaacagagattttattaacttccatcgaaaactagcccctttc
ggacctcagaatatgaaaccgaatcttgttttaagaaatcaaaagattgcaggttatctg
aaaacgatggggaaagataataatcaccttaaattttacatcaaacaagaatctacagga
agaaatatcgaatgtgtcggctttaaattgggtcaatttgctgatgattttagaaataaa
tcttttgacatcgcttttactttagaagaaaaccattggaaagggaatgtgacccactat
ctgaatatcagagatgtgaaatttagagaagactaa
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