KEGG   Chryseobacterium sp. C-71: LNP04_17205
Entry
LNP04_17205       CDS       T08775                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
ctur  Chryseobacterium sp. C-71
Pathway
ctur03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ctur00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LNP04_17205
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ctur03019]
    LNP04_17205
Enzymes [BR:ctur01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     LNP04_17205
Messenger RNA biogenesis [BR:ctur03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     LNP04_17205
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 HEM4 ERCC3_RAD25_C AAA_22 P-loop_SecA Cas3-like_C_2 Helicase_C_2 Phage_integrase
Other DBs
NCBI-ProteinID: UFH31682
LinkDB
Position
complement(3719205..3720473)
AA seq 422 aa
MLFTDLNIIKPILDALQKQGYEKPTPIQEQAIPSILEHRDVLGTAQTGTGKTAAFAIPIL
QNLTERKGPKNNHIKALILTPTRELAIQIEESFDAYGKNLPLRKLVVFGGVKQGSQETAL
RRGVDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPQKRQ
TLFFSATMPTEIQKLADSILNTPIKVSVTPISSTAETIKQAVYFVDKDNKLELLTHILQN
DIQGSVLVFSRTKHGADKIARKLQSANISAEAIHGNKSQNARQNALNNFKGGRTRVLVAT
DIAARGIDIDELKYVVNYELSDVAETYVHRIGRTGRAGSEGSSISFVDGLDLLNLKDTEK
LIGMKIPVEKNHPFHTDNLVVEKRDSNNKPFTPRPRPAGGGQQQKSDHSKKPKNKSNFSR
KK
NT seq 1269 nt   +upstreamnt  +downstreamnt
ttgttatttacagacttaaacattatcaagcccatcttagatgcgcttcaaaagcaaggt
tatgaaaaacctacccctattcaggaacaagcaattccttcaattttagaacacagagat
gtactgggaactgcacagacaggaaccggaaaaacagcagcatttgctatccctatctta
caaaaccttaccgaaagaaaaggtcctaagaacaatcatattaaagcattaattcttact
ccaaccagagaattagcgatacagatcgaggaaagcttcgatgcatacggaaaaaattta
cctttaagaaaattagtagttttcggtggtgtaaaacaaggaagtcaggaaacagctttg
agaagaggtgttgacattttggtggcgactccaggaagactactagattttatcgctcag
ggaattatcagtttgaaaaatcttgaaatctttgtattagacgaagccgacagaatgttg
gatatgggttttgtacacgatgtgaaaagaatcattaaacttttacctcaaaaaagacaa
acactattcttctcagcaaccatgcctacagaaattcagaaattggcagattctattttg
aatactccgattaaagtttctgtaactccgatttcttctacagctgaaacaatcaaacaa
gcggtttattttgttgataaagacaataaattagaattgttgacgcatattctgcaaaac
gacatccaaggatctgttttggtattctccagaacgaaacatggagctgataaaattgca
agaaaattacagtctgcaaatatctctgccgaagcaatacacggaaacaaatctcaaaat
gcaagacagaatgctttaaataattttaaaggaggaagaacgcgtgttttggtagcaaca
gacatcgccgcaagaggaattgatattgacgaactgaaatatgttgtaaactacgaactt
tcagatgttgcagaaacttacgttcacagaattggtagaacaggccgtgcaggttctgaa
ggatcatcaatctctttcgtagatggtttagatttattaaacctaaaggatactgagaaa
ttgattggtatgaaaattccggttgagaaaaatcatccttttcataccgataatctagta
gttgagaaaagagattctaacaacaagccttttacaccaagaccaagaccggctggtggt
ggtcagcaacaaaaatcggatcacagtaaaaagccgaaaaataagagtaatttttctaga
aagaaataa

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