Chryseobacterium sp. C-71: LNP04_18750
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Entry
LNP04_18750 CDS
T08775
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ctur
Chryseobacterium sp. C-71
Pathway
ctur03030
DNA replication
ctur03430
Mismatch repair
ctur03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ctur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LNP04_18750 (dnaE)
03430 Mismatch repair
LNP04_18750 (dnaE)
03440 Homologous recombination
LNP04_18750 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ctur03032
]
LNP04_18750 (dnaE)
03400 DNA repair and recombination proteins [BR:
ctur03400
]
LNP04_18750 (dnaE)
Enzymes [BR:
ctur01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LNP04_18750 (dnaE)
DNA replication proteins [BR:
ctur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LNP04_18750 (dnaE)
DNA repair and recombination proteins [BR:
ctur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LNP04_18750 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UFH31981
LinkDB
All DBs
Position
4052117..4056787
Genome browser
AA seq
1556 aa
AA seq
DB search
MYLVFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDDDGNLLENQDYIIKPEGYDIPF
NAARIHGITTKIANEEGRDLQEILEEFSKVLERVRVVSGHNVEFDYNIVGAEFFRKNIQD
NLQQKPKADTMILGTDYCQLGGGRGGRYKSPKLEELYEKLYGHKFDEAHNAAADVNATAQ
VFFEMMRIGIIPAEVLKTSEDQLAYFKTLHPNPIKPFGIIIRRQVADFNNKKKQSDVGSI
DDIDLGRYFNFDNKSVFSTLTATSSINDLINKATEDQFPAVGMVDLGNMMGAFKFVSAVE
STNSDRSKKHKEFLAKKQEAEENGTEFNEIEPLSEPLIPVVGCEFFISDRYEQKQFTKDD
PDRRTQVVLLAKDFNGYKNLAKLSSIGFLKGFYFGVPRISRELIAEYKEGLIALTSGING
DIPDAILNTGEQKGEELFKWWKDTFKDDFYVQIQNHKLPEEEHLNDVLLHFADKYNVKIL
AQNQTYYTNKDDSNIQDIVSCIKDGEKLTTPVGKGFGKRRGLASGEYYIKNAHEIKETFL
NYPDAFDAYEEFTAKFSPYTLKRDVLLPKFDIPDEFIHPEDEIDGGKRGEMAYLTHLTYE
GAKKRYTETGITDEIKERLDFELEVVANTGYPGYFLIVQDFCNEARNMGVWVGPGRGSAA
GSVVAYCTGITNVDPIKYDLLFERFLNPERISMPDIDIDFDDEGRDKIIKWVVEKYGKNQ
VAQIITYSVLGGKSAIKDAGRVLDLPIPDTNNIAKLIPPSPGMNIAKALSKYDKLKPEEQ
QLVDEMKYVLNTPDDNRHDVLASAKKMEGCIRNTGIHACGVIITPEDVSNLVPVTIAAKD
ADILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKQRHNIDINPDEIPLDDAKTY
QLFKEGRTVGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGIE
EIIYDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIEVLNKMY
PKFIEGGRKNNLDEGPLEKIWNDWKAFAEYAFNKSHSTCYALIAYQTAYLKANYPAEYMA
SVMSNNINNTESITMFMEDCKSIGVDVLGPDVNESHYKFSVNEKGQIRFGLGAIKGIGEG
PSEGITKERANGRFKNIYDFFERILPSQMNKRVAESLVLAGAFDEFNMYHRGQYFDIDMA
GRTNLERLIRYGQSFQESKNEMENSLFADFAEEVQIEQPKLLPCPEWPNMHKLNKEKEII
GFYLSAHPLDEFKYHYQFMQGKLSKKAVLEKEDEVKVVIDEVVPILEADDKDETIDITEI
ISDDIVAGEEEIIEEVTKKAEPKGNFGFLNLDEVDAYKEQAFANKPPELFEEKKKDWKTL
QKERENGGSGKEYTVAGLITEYVVKDGFKSGEKVAFLTVEDYSGSYSFRLGDRDYMRLKE
KLEVQRFVILKIKFAQVKDGRVFVNVVDVIELQEAFEKYAKSISLVMDVMDFRREDLEFF
RNVLDQNKGNQKFKFLIKNSEENSDMELQSMRYSVDLNGDLIKEIQLLNKYEFYLN
NT seq
4671 nt
NT seq
+upstream
nt +downstream
nt
atgtatttagtttttgacacagaaaccacaggtttaccgaaaaatttcaatgcaccgctt
tcagattcagacaactggccaagaatggttcagattgcctggcaactgcatgatgatgac
ggtaatttgcttgaaaatcaagattatataattaaaccggaaggttatgatataccattt
aatgctgcaagaattcacgggattacaaccaaaattgccaatgaagaaggccgtgatctg
caagaaattttagaagagttttctaaagttttagagcgcgtaagagtagtttctggacac
aatgtagagttcgattacaacatcgttggagctgaatttttcagaaaaaatattcaggat
aatcttcagcaaaagccaaaagccgacacgatgattctgggaacagattattgtcagctt
ggcggtggaagaggaggaagatataaatctcccaaattggaagaattatatgaaaaattg
tacggtcataaatttgacgaagctcataatgcagcagccgacgtaaatgcaactgctcag
gttttcttcgaaatgatgcgtatcggaattattcccgctgaggttttaaaaacttcggag
gatcagcttgcttattttaaaacgctgcatccaaatccgataaaaccttttggaattatt
atcagaagacaggttgctgattttaacaataagaaaaagcaatccgatgttggtagtatt
gatgatattgatttaggtagatatttcaatttcgataataaaagtgttttttcaacatta
acggcaacttcaagcattaatgacttaattaataaagctactgaagatcaatttccggca
gttggaatggtagatctggggaatatgatgggagctttcaaattcgtttctgctgttgag
tctaccaactctgatcgttcaaaaaagcataaagaatttttagctaaaaaacaggaagct
gaagaaaacggaacggaatttaatgaaatcgaacctctttcagaacctttaattcctgtc
gtaggttgtgaattttttatatcagaccgttatgaacagaagcagtttaccaaagatgat
ccggatagaagaacacaggttgttttactggcaaaagatttcaacggatataaaaattta
gccaaactttcaagtatcggatttttaaaaggcttctatttcggagttccgaggatcagc
cgtgaattgattgctgaatataaagaaggattaatcgctttgacttcaggaatcaacgga
gatattccagatgccattttaaatactggtgagcaaaaaggcgaggagcttttcaaatgg
tggaaagatacttttaaagatgatttttatgtgcagattcaaaatcataaacttcctgaa
gaggagcatttgaatgatgttcttttacattttgcagataagtataacgttaaaatttta
gcacaaaatcaaacctattacaccaataaagacgattctaatattcaggatattgtaagc
tgtataaaagatggtgaaaagctgacaacacctgtaggaaaaggtttcgggaaaagaaga
ggattggctagcggcgaatattatattaaaaatgcccacgaaatcaaggagacttttctg
aattaccctgatgcgtttgatgcatacgaagagtttacggcaaaattcagtccttatact
ttaaaaagagatgttctcttgcctaaatttgatattccagatgaatttattcatccagaa
gatgaaattgatggcggaaaacgtggcgagatggcgtatttgacacatcttacttatgaa
ggtgctaaaaaaagatatacagaaacaggaattactgacgaaatcaaagaacgtctggat
tttgaactggaagtagttgccaacacagggtatccgggttactttttgattgtacaggat
ttctgtaacgaagcccgaaatatgggggtttgggtaggacccggtcgtggttctgcagcg
ggttccgtagtggcttactgcacaggaattaccaatgttgatcccattaaatatgatctc
ctatttgagagattcctgaaccctgaaaggatttcaatgcccgatattgacatcgatttt
gacgatgaaggtcgtgataaaatcatcaaatgggttgttgaaaaatacgggaaaaatcaa
gtagcgcagattatcacatattcagttttgggtggaaaatcggctattaaagatgccgga
agagttttagatcttccaattcctgataccaataatattgcgaaattaattcctccaagt
ccggggatgaatattgcgaaagctttatctaaatatgataagctaaaacccgaagaacag
cagcttgtcgatgagatgaagtatgttcttaatacacctgatgataaccgtcacgatgtt
ttggcaagtgccaaaaagatggaaggttgtatcagaaatacaggaattcatgcttgtggt
gtaattattacgcccgaagatgtcagtaatctggttccggtaacgattgcggcaaaagat
gctgatattttggtttctcagtttgacaactcggtggcggaaagcgcagggcttctgaag
atggactttttgggtctaagaacactgacaattattaaagatgcattaaaacttgtaaag
caaaggcataacattgatatcaatcctgatgagattccgctggatgatgccaaaacctat
caattgtttaaagaagggagaacggttgggattttccaatatgaaagtccgggaatgcaa
aagtatatgcgtgaactgaagccaactgtttttgccgatttgattgccatgaacgcactg
tatcgccctggccccatcaagtatattccaaattttatcaacagaaagcacggaattgaa
gaaattatttatgacttaccggaaactgaagaatatttaaaagaaacctacggaattacc
gtttatcaggaacaggtaatgcttttgtctcaaaaattagccaattttacaaaaggtgaa
gccgatactttgagaaaggcgatgggtaaaaaacagatcgaagttctgaataaaatgtac
ccgaaattcatcgaaggcggtagaaaaaataaccttgatgaaggacctttagaaaaaata
tggaatgactggaaagcctttgcagaatatgcttttaacaaatcccactcgacctgttat
gctctgattgcttatcaaacggcatacttaaaggcaaattatcccgcagaatatatggcg
agtgtaatgagtaacaatattaacaatacagaatcgattaccatgtttatggaagattgt
aaaagtattggcgttgatgttttgggaccggatgtgaatgaatctcactataaattttcg
gtaaatgaaaaagggcagatccgctttggattgggggcaataaaaggaatcggagaaggg
ccgagcgaagggattacgaaagaaagagcaaatggaagatttaaaaacatttatgatttt
tttgaaaggatcttaccgtctcaaatgaataaaagagtggcggaaagtttggttttggct
ggagcttttgatgagtttaatatgtatcacagaggtcagtattttgacattgatatggcg
ggaagaacaaatctggagcgattaatcagatacggacaaagttttcaggagagtaaaaat
gagatggaaaattctctttttgctgattttgcggaagaagttcaaatagagcaacccaaa
ttattgccttgtccggaatggccaaacatgcataaattaaataaagaaaaagaaatcatc
gggttctatctttctgcacatccgctcgatgaatttaaatatcattaccagtttatgcag
ggtaagctttctaaaaaagcggttcttgaaaaagaagatgaggtaaaagtagtaatcgat
gaagttgttccgatcttggaagcagacgataaagatgaaacgatagatattacagagatt
atttcagatgatattgttgccggtgaagaagaaatcatagaagaagttacaaaaaaagca
gaaccaaaaggaaattttggatttttaaatctggatgaggttgatgcttataaggaacag
gcttttgccaacaaacctccggaattatttgaagaaaaaaagaaagattggaaaaccctt
cagaaagaaagagaaaatggcggtagcggaaaagaatatactgttgctggtttgataacg
gaatatgtagtgaaagatggttttaaaagtggcgaaaaagtggcattcttaactgtggaa
gattattccggctcatattctttcaggttaggcgaccgggattatatgcgtctgaaagag
aaattggaagttcagcgtttcgttatattaaagataaaatttgcccaggtaaaagatggg
cgtgttttcgtcaatgtagttgatgttatcgaacttcaggaagcatttgaaaagtatgca
aaaagtatttcgctggttatggatgtgatggatttcaggagagaagatttagagtttttc
agaaatgttctcgatcaaaataaaggaaatcaaaaattcaaatttttaatcaaaaattca
gaagaaaattcagatatggaattacaatcaatgagatattctgttgatttaaatggagat
ttgattaaagaaattcaattgttgaataaatatgagttttatcttaactaa
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integrated database retrieval system
