Chryseobacterium sp. C-71: LNP04_19365
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Entry
LNP04_19365 CDS
T08775
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ctur
Chryseobacterium sp. C-71
Pathway
ctur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP04_19365 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctur03019
]
LNP04_19365 (rny)
Messenger RNA biogenesis [BR:
ctur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LNP04_19365 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
AAA_15
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
UFH32101
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All DBs
Position
4202690..4204258
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AA seq
522 aa
AA seq
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MTTAIIVGVICLVIGAVLGMVFSKSSLNAKGKFIIDDATKNAENLIEKANVQAESIKKEK
NLQAKEKFLELKSQHDADIQSRERKMQEGEKRVKDKENKLNDELSKAGKLEKDLDRQIAD
YAKKTEVLERKQQELDSATSKKVEMLEKISNYTAEEAKAELVETMKAEAKTRAQAHVQSI
MEEAQLNAKSEARKIVIQTIQRIGTEQAIENSVSVFNIESDEVKGRIIGREGRNIRALEA
MTGVEIIVDDTPEAILLSCFDPVRREIARLSLHRLVTDGRIHPARIEEVVEKTKKMIEEE
IIEVGKRTIIDLGIHGLHPELVKIVGRMKYRSSYGQNLLQHSREVANIAATMAAELGLNV
KMAKRAGLLHDIGKVPEQESELPHALLGMQWAEKYGENPEVINAIGAHHDEVEMTSLLSP
IIQVADAISGARPGARRQVLESYIQRLKDLEAAALSFEGVSSAYAIQAGRELRVMVESGK
VNDEIASQLSYDISEKIQNELTYPGQVRVTVIRETRAVNIAR
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgacaacagccataatagtcggcgttatttgtttagtaataggtgctgttttaggaatg
gtattttctaaaagctctcttaatgctaaaggcaaatttattatagacgatgcaacaaaa
aatgccgaaaaccttatagaaaaagctaatgtacaagccgaatcgataaagaaagaaaaa
aatcttcaggcaaaagaaaagtttcttgagctgaaatctcagcacgatgcagacattcag
tctcgtgaaagaaaaatgcaggagggcgaaaaaagagtaaaagacaaagaaaacaaactg
aacgacgagcttagcaaagcaggtaaacttgaaaaagatttagacaggcagattgcagac
tacgctaagaaaacagaagttttagaaagaaaacagcaagaattagactcagcaacttct
aagaaagttgaaatgcttgagaaaatttcaaactacaccgctgaagaagctaaagcagaa
ttggtagaaaccatgaaggcagaagctaaaaccagagctcaggcgcacgttcagagcatc
atggaagaagctcagttgaatgctaaaagtgaagcgagaaaaattgttatccagaccatt
cagagaatcggtacagagcaggcgatcgaaaactcagtatctgtttttaacatcgaatct
gacgaagtaaaaggtagaattatcggtagagaaggtagaaacattcgtgctttagaggct
atgactggtgtagaaatcattgttgatgatactcctgaagctattcttctttcatgtttc
gatccggtaagaagagagatcgcaagattgtcacttcacagattggtaactgacggtaga
attcaccctgcaagaattgaagaggttgtggagaaaaccaaaaaaatgatcgaagaagag
atcattgaagttggtaagagaacaatcatcgatctggggatccacggcttacacccggaa
ttggtgaaaattgttggtagaatgaaataccgttcgtcttacggacaaaaccttcttcag
cactcaagagaagtagccaacattgctgcgacgatggctgcagaattaggattaaatgtg
aagatggctaaaagagcaggtcttttacacgatatcggtaaagttcctgagcaggaatct
gaacttcctcacgctttattaggaatgcaatgggcagagaaatatggtgaaaatcctgaa
gttatcaatgcaattggtgctcaccacgatgaagtggaaatgacttcattactatctcca
atcattcaggttgccgatgcaatttcaggagcaagaccgggagcaagacgtcaggtttta
gaatcttacattcaaagactgaaagatcttgaagctgcggctttaagttttgaaggagtt
tcaagtgcttatgcaattcaggcgggtagagaactgagagtaatggtagaaagcggaaaa
gtaaatgacgaaattgcttctcaactttcttacgacatttcagagaaaattcagaacgaa
ttaacatatccaggacaggtaagagttacggtaatcagagaaacaagagctgttaatatc
gcaagataa
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