Acetivibrio thermocellus DSM 1313: Clo1313_0220
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Entry
Clo1313_0220 CDS
T01933
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ctx
Acetivibrio thermocellus DSM 1313
Pathway
ctx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Clo1313_0220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctx03400
]
Clo1313_0220
Enzymes [BR:
ctx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Clo1313_0220
DNA repair and recombination proteins [BR:
ctx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Clo1313_0220
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ADU73314
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All DBs
Position
241027..244563
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AA seq
1178 aa
AA seq
DB search
MSILLKDKQYLIEPLFEIKEYTNVLENIKRGIPTTVTGPSESQKVHIACALCGHLGLKGI
YIAYNEMQARKMFEDVSFFFGKDAVFFPSKEIMLHDVEAKSYDSIYERINALYRIVNDDY
GFIVTSAEALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSIGYERVTTVEGKSQFA
VRGGIVDIFPVNADTAVRIELFDDEVDSVRSFDTMTQRSVENLEAVTILPARELIYPPGL
RDSIVEKILNDLKIQIKKMEGKNNKSGIQKLEAKINSDIERFSQEYYFAGMDRYIPYIIE
KPSAVIDYIDSEILVFVDEPKRFEQRIENLITESNEMCKSFMENGQLLAGSFDIFFDCNY
LWDKVKKCKNTLYFTTLPSDDGQEGKRENIVSKLLNSYQGHLEILEEDISHWKKNGARVV
ILSGTKSRGEMLAETLRTKDIEAVYLEEPHRDIQPGEVVITHGVLNRGFEYPGIGFVVVS
GKELFGQEKKTRRHKSAKGKKISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKKDYL
KIQYSDGDYLYVPTNQLDLIQKYIGSEGKTPKLSKLGGTDWAKTRARTKESLKELAQELI
NLYAQREMAEGHAFGKDTVWQKQFEDLFPYQETEDQLRCIEEIKRDMESPRPMDRLLCGD
VGYGKTEVAMRAVFKAVMDGKQVAYLVPTTVLAQQHYNTFKERMKDFPITVEVLSRFRTQ
AEQKRILKDVKAGMVDVLIGTHRLLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKQMKTNI
DVLTLTATPIPRTLHMSLVGIRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRG
GQVFYLYNRVRAINQKAAEIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTT
IIESGLDMPNVNTIIVEDADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKR
LQAIKEFTEFGSGFKIAMRDLQLRGAGNLLGPQQHGHIDSVGYDMYCKLLAEAVNELRGI
PVTKEDEEISIDVNVSAYIDNDYIGDENQKIDMYKKIASINDEQDVIDAEDELMDRYGEI
PQPVKNLLQIAYIKSLAKACGFSSVQEKNDTVIFQYSESKNINFEVLGKLMDKYRRKLLF
TASNRPYITFKTTGVKGEELLEIIKILLQDVKKLQEGL
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgagtatattattaaaggataaacagtatcttatagagcctctttttgagataaaagag
tataccaatgtgcttgagaatataaaaaggggaatacctacaactgttacgggcccttcg
gaatcccagaaagttcatatagcctgtgctctgtgcggccatttgggcttgaaaggcata
tacatagcttataatgagatgcaggcaagaaaaatgttcgaggatgtttcatttttcttt
ggaaaagacgcagtgtttttcccgtcaaaagaaattatgcttcatgatgttgaggcaaaa
agctatgattcaatttatgagagaataaatgctctttacaggattgtgaatgatgactac
ggctttatagtaacaagtgcggaagcattgtgtcaaaaacttattgacaggaagctcttt
aaagagagcatagtaaatgtcgctttgggggacaggattgatcttggcctttttacgcaa
aagcttgtttcaataggttatgaaagagtgacaactgttgaaggtaaaagccagtttgcg
gtccgcggaggaattgtggacatttttccggtaaatgctgacacggccgtaagaattgaa
ctttttgacgatgaagtggattccgtaagaagttttgacaccatgacacaaaggtctgtg
gaaaaccttgaagcggtaacgattttgcccgcaagggagttgatttatcctccgggcttg
agagactctattgtggaaaaaatattgaatgacttgaagattcaaataaagaaaatggaa
ggtaaaaacaacaaaagcgggatacaaaagctggaggctaaaataaattccgatatcgaa
agattttcccaggaatattattttgcggggatggacaggtatattccctatattatcgaa
aagccgtcggccgtgattgattatatagattccgaaatacttgtctttgtggacgaaccg
aagagatttgagcaaagaatagaaaatcttataacggaaagcaatgagatgtgcaaaagc
ttcatggagaacggacagctccttgcgggaagctttgacatcttttttgattgcaattat
ttgtgggataaggtgaaaaagtgtaaaaacacactgtattttaccactcttccctctgac
gacggacaggaaggaaagagggaaaacatagtttcaaagcttcttaactcctatcaggga
catttggaaatactggaggaagacataagtcactggaagaaaaacggggcaagagttgtc
atcctttcggggactaaaagccgaggagaaatgctggccgagactttaagaacaaaagat
attgaggctgtatacctggaggaacctcaccgggatattcagcccggagaagtggtaata
acccatggtgttttaaaccggggattcgaatacccaggtatcggttttgtggtggtaagc
ggaaaggaactgtttggccaggagaaaaaaacaagaaggcataaatccgccaaggggaag
aaaataagcgtatttaccgatttgaacgtgggtgactatgttgttcactatgttcatggt
ataggaaaatatataggaattgagcagctggtggtagagaatgtaaagaaagattatctc
aaaattcagtacagtgacggagattatctttatgttcccacaaaccagcttgacctgata
caaaagtacataggttcggaagggaaaaccccgaagcttagcaaactgggaggaacggac
tgggcaaagacaagagccaggacaaaggaatcattaaaggagctggctcaggagcttatt
aatttatatgcccagagggaaatggcagaagggcatgcttttggaaaggataccgtatgg
cagaaacagtttgaggatctgtttccgtatcaggaaacggaggatcagctgagatgcatt
gaggagataaaaagggatatggaatcgccgaggcccatggacaggcttctttgcggcgac
gttggctacggcaagaccgaagtggcaatgcgggcggtgtttaaagcagttatggacgga
aaacaggtggcttatctggttcccacaacggttcttgcccagcagcattacaacactttt
aaggaaagaatgaaggattttccgataacagtggaagtattaagcaggtttagaacacag
gcggaacaaaaaaggatattgaaagatgtaaaagccggcatggtggatgtgcttatcgga
actcacagacttctgcagaaagatgtttgcttcaaggacctcgggcttttggttatagac
gaagaacagcgtttcggggtgacgcacaaggaaaagatcaaacaaatgaagacaaatatt
gatgttttgactcttacggcaacaccgataccgagaactttgcacatgtcccttgtaggg
atcagggatataagcacaattgaagagcctccggaggaaagataccctgttcagacgtat
gtcatggaatacaacgatgaagtggtaagagacgctataaacagggaaatgagccggggc
ggacaggttttttatctttacaaccgggtaagagccataaatcaaaaagcggcggaaata
caaaaactggttcccgaagcccgggtggccattgcccacgggcagatgaacgagacggag
ctggaaaacatcatgttccggtttataaacggtgaatatgacatacttgtgtgcaccacc
ataattgaatcgggactggatatgccgaatgtcaataccattatagtggaagatgccgac
aagatgggtcttgcccagctttaccagttaaggggcagggttgggcgttcaaacaggctt
gcctatgcctatataacctacaagaaggataaggttttatctgaaattgcggaaaagaga
cttcaggccataaaagaatttacagaatttggctcgggatttaaaatagcaatgcgggac
cttcagctaaggggcgcgggaaatcttttagggccgcagcagcacggacacatagactct
gttggttatgacatgtattgcaagctcttggctgaagcggtgaacgagcttaggggcata
cctgtcaccaaggaggatgaggagatttccatagatgtaaatgtaagcgcctatatagac
aatgattatataggtgatgagaaccagaagattgatatgtataaaaaaattgcatccata
aatgatgaacaggatgttatagatgcggaggacgaacttatggaccgctacggcgaaata
ccgcagccggtgaaaaatttgcttcagattgcatatataaaatctttggctaaagcatgc
ggattctcctctgttcaggaaaagaacgatactgtaatttttcaatactctgaaagcaaa
aatataaattttgaggtattggggaaactcatggacaaatacagaagaaaacttcttttc
acggcaagcaacagaccatatatcacctttaagacaacaggagtaaaaggggaggaactt
ctcgaaattattaagattttgttacaagacgttaagaaattgcaggagggtttataa
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