Acetivibrio thermocellus DSM 1313: Clo1313_0417
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Entry
Clo1313_0417 CDS
T01933
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ctx
Acetivibrio thermocellus DSM 1313
Pathway
ctx03420
Nucleotide excision repair
ctx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Clo1313_0417
03430 Mismatch repair
Clo1313_0417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctx03400
]
Clo1313_0417
Enzymes [BR:
ctx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Clo1313_0417
DNA repair and recombination proteins [BR:
ctx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Clo1313_0417
MMR (mismatch excision repair)
Other MMR factors
Clo1313_0417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
AAA_12
AAA_14
ResIII
DEAD
DUF2067
Motif
Other DBs
NCBI-ProteinID:
ADU73506
LinkDB
All DBs
Position
468555..470780
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AA seq
741 aa
AA seq
DB search
MDLLKDLNKEQREAVLHVDGPLLVLAGAGSGKTKVLTHRIAYLIKEKNVHPASILAITFT
NKAAREMRERIDRLVEDVSDSIWVSTFHSMCVRILRRDIEKIDYDKNFVIFDYADQQNVV
KDCLKELNLSDKNFPPKSILEMIGRAKDELITPDSYLKMYSGDFRMEKIARVYELYQKKL
KQNNALDFDDIIMLTIKLFLDNPEVLNYYQRKFKYILVDEYQDTNTAQYSLVSLLAQGYR
NLCVVGDDDQSIYGWRGANIRNILDFEKEFKDAKVIKLEQNYRSTQIILDAANHVIKNNV
GRKAKRLWTNNKGGDGIRYLECLNEHEEAYFVASEIKRLCREQNRSYKDFAVLYRINAMS
RVIEDELMREGISYKIFGGLRFYDRKEIKDVIAYLRVIQNPSDNISLKRIINEPKRGIGN
ATIDTAERLANERGVSIFSIISSAAEIPELARASSKLEKFVSLINSLRAQSMVMTASEMI
EEVLERTGILEAYRQENTLEAQSRIENIKELLSVAIEFENESEEKSLTDFLAHVSLVSDV
DTMDENSEYVALMTLHSAKGLEFPVVFLVGMEEGIFPGYRSMTNESELEEERRLCYVGIT
RAKENLYMTSTFSRTLFGNTTYNRVSRFVKEIPEELFDFGGDKKKAKDENIGEGTAKKSG
TLNKDFNSSKSFNAVSFKPVQRTETSKTELKVGDVVRHKVFGEGIITKREPDGDDFKLEI
HFKGKGMKRLLESYANLTKVN
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggatttattgaaagatttgaataaggaacaaagggaagcggtacttcacgttgacggc
cccttgcttgttcttgccggtgcgggaagcggaaagacaaaagtgcttacgcacaggatt
gcgtatttaattaaagagaaaaatgtacatcctgccagtatccttgccataacttttacc
aacaaggctgcaagggaaatgagagaaagaatagaccggcttgttgaagatgtcagtgac
agtatatgggtaagtacttttcattccatgtgtgtaaggatactaagaagggatatagaa
aaaatagattatgataaaaactttgtgatatttgactatgccgatcagcaaaatgttgta
aaagactgcctgaaggaacttaatctcagtgataaaaactttcctccgaagtcaatattg
gagatgatcggaagggcaaaggacgagcttatcactccggactcttatttaaaaatgtat
tccggagatttcaggatggagaagatcgcccgggtctatgagctttatcaaaagaagctg
aagcaaaataacgctttggattttgacgatattataatgcttacgataaagctttttttg
gacaatcccgaagtgctgaattattaccagagaaaattcaaatatattctggtggatgag
tatcaggacaccaacacagcccagtattcccttgtaagccttttggcacaggggtacaga
aatctttgtgttgttggggacgacgaccagtccatctatggctggagaggcgccaatata
agaaatattctggattttgagaaggagtttaaggatgcaaaagtaataaagcttgagcag
aactaccgttcaacccagattatccttgatgcggcaaaccatgttatcaagaacaatgtg
ggaagaaaagccaaaaggctttggacaaacaataaaggaggagacgggattagatatctc
gagtgcctgaatgagcatgaagaggcgtattttgtggcaagtgagataaagaggctctgc
agggagcagaaccgctcttacaaggattttgccgtactttatcgtataaatgccatgtcc
cgtgttattgaggatgagcttatgagggaaggaataagctacaagatatttggagggctt
aggttctatgacagaaaagaaataaaagatgtaattgcctatcttcgtgttattcaaaat
ccttcggataacataagtctaaagaggataataaatgagcctaaaagaggtattggaaat
gcgaccatagatactgcagagagactggcaaatgaaaggggagtcagcattttctcaatt
atttcatcggcggcggaaattcccgagcttgcccgggcttcgtcaaagcttgaaaagttt
gtctcgctgataaacagcctgagggcccaaagtatggtgatgaccgcatcggaaatgatt
gaggaggtccttgagaggacgggcattttggaggcgtatagacaggaaaataccctggaa
gcccagagcagaatagaaaacataaaagagttgctctccgttgcaattgaatttgaaaat
gaaagcgaggaaaagagccttacggattttcttgcccatgtgtccctggtttcggatgtc
gatacgatggatgaaaacagtgaatatgttgctcttatgacccttcacagcgcaaaggga
ttggagtttccggtggtatttctggtgggaatggaggaaggtattttcccgggttacagg
tcaatgaccaatgaatcggagctggaggaggagaggaggctttgttatgtaggcataacg
agggcgaaagaaaacctttacatgacaagcaccttcagccgtacgttgtttggaaatacc
acctacaacagagtttcaagatttgttaaagaaattcccgaggagctttttgatttcggc
ggggataaaaagaaagcaaaggatgagaacattggcgaaggaacggcaaaaaagagcggt
acattaaacaaggactttaactcttctaaaagctttaatgcggtaagctttaagcctgtg
caaaggacggagacgtcaaaaacggagcttaaagttggtgacgtggtgcggcacaaagtc
ttcggggaaggaattataacaaaaagagagcctgacggcgatgatttcaaactggagata
cattttaagggaaaaggcatgaagaggcttttggaaagctatgcgaatctgactaaggtg
aattaa
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