Acetivibrio thermocellus DSM 1313: Clo1313_0907
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Entry
Clo1313_0907 CDS
T01933
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ctx
Acetivibrio thermocellus DSM 1313
Pathway
ctx03410
Base excision repair
ctx03430
Mismatch repair
ctx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ctx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Clo1313_0907
03430 Mismatch repair
Clo1313_0907
03440 Homologous recombination
Clo1313_0907
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctx03400
]
Clo1313_0907
DNA repair and recombination proteins [BR:
ctx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Clo1313_0907
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Clo1313_0907
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Clo1313_0907
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Lip_A_acyltrans
Motif
Other DBs
NCBI-ProteinID:
ADU73975
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Position
1055605..1058088
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AA seq
827 aa
AA seq
DB search
MKQRRLWSMNDLSDEKVEKLSKKAGISKLLAGIFLSRGVDDPDYIKDFLNPSLDKLHDPF
ELRDMEKAVDRIVKALRQNEKILIYGDYDVDGITSTSILYDFFRRQNADVCYYIPDRLNE
GYGISMAAAEKMPEMDVDLVITVDCGITAFEEVKYITDNNIDIIITDHHECRESVPDALA
VVNPHRFDCAYPFKELAGVGVAYKLLEALSKKMNIPGFERQYLDLVALGTVADVVPLLGE
NRIIVKYGLPMIEKTSNVGLRSLIKVAGIENKEINTFLVGFVLAPRINAAGRIGDASRAV
RLLTTDNEEEALEIAKELDEQNIFRKQNELEIMEEAVNIIETGIDLQREKVIVVAGERWH
HGVIGIVSSKITERYYRPSVLISVDGEGAKGSARSIEGFNLFEALVHCGKVLEKYGGHEQ
AAGLALKPENIDEFRRMINEYADSVLDEDDLVPRMKIDVRITKEDMTLENCKELKLLEPF
GESNPPPVFRYDNLKVHEIRPVGQDSRHAKIRFDDNGTLIDAICFNGGGLTDCYELSDIV
DVVCSMEINLWNGRENVQLNIKDIRPGLAVERQNKFYFSLDRCIDFIIPQEDNIVDEVLA
KLQTVEYPGGIAEAISAFLAEGGKTAVLVNSPESLEFVENALKKTSLFSRNKYDVFYSSV
PQDNIKEVSVVVNPHPEGALLSKFDRVILFGAWMSKDYIYQIVRKIDLKKVYVYNKIIID
FTNDDIILQRQDMAAVYRYLKSCCQQNNQVVLKDLFAVAREVSKKYGISMNYFKVKRAIQ
VFEELSLLNKLPCGEREQIIVLNNMGNTKTNLENSCFFRSIQMLGSG
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaacgcagactgtggtcaatgaatgatttgtctgatgaaaaggttgagaaactt
tcaaaaaaggccggaatttcaaagctccttgccggaatttttttgtccaggggagtggat
gatccggattatataaaagattttttaaatccttcactcgacaaactgcatgatcctttt
gagcttcgcgacatggaaaaagctgtggacagaattgtcaaagcacttcgtcaaaacgaa
aagattttgatttatggcgattatgatgtggacgggataacaagcacatccattctttac
gattttttcagaagacaaaatgcggatgtctgctactatatccctgaccggttaaatgaa
ggttacggcatttcaatggctgccgcagaaaaaatgccggagatggacgtggatctggtg
attactgttgattgcggcattactgctttcgaagaggtaaaatatattactgacaataac
atagacattataataaccgaccatcatgagtgcagggaaagtgttcctgatgctttagcg
gttgtaaaccctcacaggtttgactgcgcctatccttttaaagaacttgccggggttggt
gttgcctacaaactgcttgaagccctttccaaaaaaatgaatattccgggctttgaaagg
cagtatcttgaccttgttgccctgggcaccgtggcagatgtggttccccttttgggcgag
aacagaattatagtaaagtacggccttcctatgattgaaaagacttcaaatgttggtttg
agaagcctcattaaagtagcgggaatagagaacaaagagatcaacacttttttagttggc
tttgtgcttgcaccgaggataaatgcggcgggaagaatcggagatgcgtcgagggctgtg
aggcttttgaccacggataatgaagaagaggcgttggagattgcaaaagagctggatgag
cagaatatattccgcaaacaaaatgagcttgaaataatggaggaagcggttaacattatt
gagaccggtatagatcttcaaagagaaaaggtgattgtggttgccggagaaagatggcac
cacggtgttatcgggatagtgtcatccaaaataacggagaggtattacaggccaagcgtg
cttatttccgttgacggtgagggagctaaaggttcggcaagaagcattgaaggatttaac
ttgtttgaggccttggttcattgcgggaaggttttggagaagtatggagggcatgaacag
gcggccggtcttgcattaaagccggaaaacattgatgaattcagaagaatgataaatgaa
tatgccgattccgttttagatgaagacgaccttgttccccggatgaaaatcgatgtgcgt
ataacaaaggaagatatgaccctagaaaactgcaaggaacttaagcttcttgaacctttc
ggggaaagcaatcctccccctgtgttcagatatgacaatttaaaagtccatgaaatacgt
cctgtgggacaggacagcaggcatgcaaagataaggtttgatgacaatggaactttgatt
gatgccatttgctttaacggaggcggacttacggattgttatgaactatcggacattgtg
gatgttgtgtgttccatggaaataaatttatggaacggcagggaaaatgttcagcttaat
ataaaggacatccggccggggttggcggtggagagacaaaacaaattttacttcagtctg
gaccggtgtattgattttattattccacaggaggataatattgttgatgaagttttggca
aagctacagactgttgagtatcctgggggaattgcggaagcaataagtgcttttttagct
gaaggcggcaaaacggcggttttggtaaattcccccgaaagccttgaatttgttgaaaat
gctttgaaaaaaacttcgttgttttcccgaaacaaatatgatgttttttattcttccgta
ccgcaggataatatcaaagaggtatccgtggtggtgaatccccaccctgaaggagctttg
ctatctaagtttgaccgggttatattgtttggtgcgtggatgtcgaaagattatatatat
caaatagtacgaaagattgatttaaaaaaggtttatgtttataataaaataataatcgat
tttactaatgacgatattatattgcaaaggcaggacatggcagcggtatacaggtattta
aaatcctgctgccaacagaataatcaagttgttttgaaagacttgtttgcggttgcccgg
gaagtttcgaaaaagtacggtatatccatgaactatttcaaggtaaaaagagcaatacag
gtttttgaagaattatcccttttgaataaacttccttgtggtgagagggaacagattatc
gttttaaacaatatgggaaataccaagacaaatcttgaaaactcttgtttttttagaagc
attcaaatgctggggagcggatga
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