Acetivibrio thermocellus DSM 1313: Clo1313_1122
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Entry
Clo1313_1122 CDS
T01933
Name
(GenBank) metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ctx
Acetivibrio thermocellus DSM 1313
Pathway
ctx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ctx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clo1313_1122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ctx03019
]
Clo1313_1122
Messenger RNA biogenesis [BR:
ctx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Clo1313_1122
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GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
Intein_splicing
KH_NusA_2nd
VTT_dom
NPV_P10
FUT8_N_cat
Motif
Other DBs
NCBI-ProteinID:
ADU74186
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Position
1341153..1342727
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AA seq
524 aa
AA seq
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MCAIAYLGGLLTGIVIAIIASIIASVISYRKGIEFRKKKAEAEIGSAEQEAERIISEAQK
IAEAKKREVLLEAKEEIHKSRLELDREIKERRNEIQRLERRLVQKEEALDRKVESLEQKE
ELLNKKTKEIQELYEQTLETQRQQVAELERISGLSVDEAKEVLLKNVENEVKHEMAILIK
DIEAKAKEEAEIRAKNIIAMAIQKCAADHVSEVTVSVVPLPNDEMKGRIIGREGRNIRTL
ETLTGIDLIIDDTPEAVILSGFDPIRREIARITLEKLILDGRIHPARIEEMVEKARKEVE
NTIRQEGENATFETGVHGLHPEIVRLLGKLKFRTSYGQNVLSHSIEVARLAGLMAAELGV
DVNLAKRAGLLHDIGKAVDHEVEGSHVTIGADIAKKYKESNEVVNAIASHHGDVEATSII
AVLVQAADSISAARPGARRETLESYIKRLEKLEEIANSFDGVDKCFAIQAGREIRIMVKP
EDVSDSDIALIARDIVKRIENELDYPGQIKVNVIRETRYIEYAK
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
gtgtgtgctatagcttatcttggtggattgctgacaggtatagtaattgcaataattgct
tcaattattgcttcagtaataagttaccgaaaaggtattgaatttagaaagaaaaaagca
gaagccgaaattggcagtgctgaacaggaagcagagcgaataatcagcgaagctcaaaaa
attgcggaagctaaaaaaagggaagtactgcttgaggcaaaggaagagattcataaaagc
aggttggagctcgatagagaaattaaggaaagaagaaatgaaatccagcgtctggagaga
agacttgttcaaaaggaagaggctcttgacagaaaagtcgaatccttggaacaaaaagaa
gaacttcttaataaaaagacgaaagagattcaggaactttatgaacagacacttgagaca
caaagacaacaggtggccgagcttgaaagaatatccgggctgtctgttgacgaggcaaaa
gaagtcctgctgaaaaatgttgaaaatgaagtaaaacatgaaatggcaatcctaattaag
gacattgaggcaaaggctaaagaagaggcagagatcagggcaaagaatattattgccatg
gcgattcaaaaatgtgcggctgatcacgtatctgaagttaccgtttctgttgttccactt
ccgaatgatgagatgaagggtagaataataggccgcgagggaagaaatatcaggaccctc
gaaacgcttacgggaatcgacctcattattgatgacacgcctgaagccgttatcctttcc
gggtttgatccaataaggagagaaatagcgagaattactctcgaaaagctcattcttgac
gggagaattcatcctgcaagaattgaagaaatggttgaaaaagccaggaaagaagttgaa
aacactattcgccaggaaggggaaaatgccacatttgaaacaggagtccatggattgcat
cctgagattgtcagattgcttggtaagcttaagtttagaacaagctatggccaaaatgtt
ttgagccattccattgaagtggctcgtttggcgggtttgatggcggcagagcttggagtt
gatgttaatcttgcaaagagggcaggcttgctgcacgatatcggcaaggccgttgaccat
gaagttgaagggtcacacgttacgattggagctgacattgctaaaaagtataaagaatcc
aatgaagttgtcaatgcaattgcttcgcaccatggcgatgtagaagccacctccatcata
gcggtgcttgtacaagctgcggattctatttcggctgcaaggcccggagcaagaagggaa
actcttgaatcatatatcaagagattggagaagcttgaggaaattgcgaattcttttgac
ggtgttgataagtgttttgctattcaggcaggtagagaaattcgtatcatggtgaaacct
gaggatgtatcggattcagatattgcattgattgcaagagatattgtgaaaaggattgaa
aatgagcttgattatcccggacagataaaagtgaatgttatcagggagaccaggtatata
gaatatgctaaatag
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