Acetivibrio thermocellus DSM 1313: Clo1313_1249
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Entry
Clo1313_1249 CDS
T01933
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ctx
Acetivibrio thermocellus DSM 1313
Pathway
ctx03420
Nucleotide excision repair
ctx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ctx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Clo1313_1249
03430 Mismatch repair
Clo1313_1249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctx03400
]
Clo1313_1249
Enzymes [BR:
ctx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Clo1313_1249
DNA repair and recombination proteins [BR:
ctx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Clo1313_1249
MMR (mismatch excision repair)
Other MMR factors
Clo1313_1249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_11
AAA_30
Rubrerythrin
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
ADU74312
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All DBs
Position
1479986..1482106
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AA seq
706 aa
AA seq
DB search
MNQEEFFRLLSDKYNINLNPQQKEAVLRIHGPSLLLSVPGGGKTTVIVSRCANMVLNHKI
PPEKILTLTFSKAAAQDMKTRFCDIFGKELARNMVFSTIHSFCYSVVRCYVESKNKPMPQ
ILEDGEGQISKNQMLKRIYHEVNNEYISDDRLEDLSNSVSFVKNMLYTEDDIKKLDIGIK
NFIDIYNAYEKRKKSEGYIDYDDMLTGTYKLLKRNTGITNMLRERYHYINVDESQDTSLV
QHEIIKLVAHPKNNIFMVGDEDQSIYGFRAAFPQALLDFKKTYPDAKILLMERNYRSTKS
IVIPANIFIKQNKGRYEKNMYTENEEGEAVVFKHVKNRNEQYAYLTSVLKSESNLSECAV
LYRNNISAIPLVDYLEYNNIPFYIRDTNLHFFKHWVVNDVLSFIRLALDPCDIEAFGQIY
YKIGAFISREMFEYVAENMGKGKGVMETLLNFPNLPEDTCNAVKYLAGQIETIDYLKPLK
AIEFIEKECEYEKYIRRASKEMGYSIDSLNYIIDGLKSIASRVDSFDEFFGRLSILKSAI
ENSGKNRYKNAVVLTTIHSSKGLEFDKVYMIDLVDGQFPSSKSISDCKEGNDALMEEEVR
LFYVGVTRARKYLELITFSKVNNKPVSVSRFVHRFNLVQKQTESRALPNEICEGAILEHV
KFGQGLVTRIDESKDLIVIEFEGVGTKMLSLKTCIDGKKIQPVKIS
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaggaagagtttttcaggcttttgtcagacaaatacaatattaatttgaatccc
cagcaaaaggaggctgttttgcgaattcacgggccttcacttttgctttccgtgccggga
gggggaaaaaccaccgtaattgtgtcaaggtgcgccaatatggttctaaatcataaaata
cctccggaaaaaatacttacgctgacattcagcaaggcagcggcccaggacatgaagacc
cggttttgtgatatcttcggaaaagagctggcacgtaatatggtgttttcaaccattcac
agcttttgctacagtgttgtgcgctgctatgttgaaagcaaaaacaaacccatgccccag
attcttgaagacggtgaaggccagatttccaaaaaccagatgttaaagcggatttaccat
gaagtaaacaatgagtatatcagcgacgacaggcttgaggatttgtccaactctgtgagc
tttgtcaaaaatatgctttacactgaggatgatataaaaaaattggatatcggaatcaaa
aattttattgatatttacaatgcatatgaaaaacgtaaaaagtcagaaggatatatagat
tatgacgacatgctcaccgggacttataagcttcttaaaagaaataccgggattactaat
atgttaagagaaaggtaccattatatcaatgtagacgaatcccaggatacatctttggtc
cagcatgaaattataaagcttgttgcccacccaaaaaacaatattttcatggttggggat
gaggaccagagcatttatgggtttagggctgcttttccccaagcgcttcttgattttaaa
aaaacctatcctgatgcaaaaattttattaatggaaagaaactatcgttccacaaagagc
attgtgattccggcaaatatttttataaagcagaacaaagggcgatatgaaaaaaatatg
tatactgaaaatgaagaaggcgaggccgtggtattcaagcatgtaaaaaatcgcaatgaa
cagtatgcatatcttacttcggttttaaaatctgagagtaatttatcggaatgtgccgtt
ctttacaggaataatatttctgccattccactggtggattatctggaatacaacaacata
cctttttatatcagagataccaatcttcattttttcaagcattgggtggtaaatgacgtt
ctttcttttatacggcttgccttggatccttgtgatattgaggcttttgggcaaatttac
tacaaaatcggtgcttttataagccgtgagatgtttgagtatgttgctgagaacatggga
aaggggaagggtgtcatggaaactttgctgaatttccccaatttgcccgaagacacctgt
aatgctgttaaatacttggccggacagattgaaaccattgattatttgaagcctttgaag
gcaatagaatttatagaaaaggaatgtgagtatgaaaaatatattcgcagggcatcaaag
gaaatggggtattccattgatagtcttaattatattattgacggcttaaaatcgatagct
tcaagggttgattccttcgatgagtttttcggaaggctttccatactgaaatcagctatt
gaaaattccggcaaaaacaggtacaaaaatgcagttgttttgactaccatacattcaagc
aagggccttgagtttgacaaagtatatatgattgacctggtggacgggcaatttccgtca
tcaaaaagcataagcgattgcaaggaaggcaacgacgctttgatggaggaagaggtccgg
cttttctatgtgggtgttaccagagcaagaaagtaccttgagcttataactttttcaaag
gtaaataacaagccggtttcggtatcaagatttgttcaccggtttaatcttgtccaaaag
cagactgaaagcagagccctgcccaatgaaatttgcgagggggcaatattggaacatgta
aaattcggacaaggcttggtaaccaggattgatgagtctaaagatttaattgtgattgaa
tttgaaggtgttggaacaaagatgctttccttaaaaacatgtatcgatggaaaaaagata
cagcctgtaaaaatttcttga
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